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    JMJD4 jumonji domain containing 4 [ Gallus gallus (chicken) ]

    Gene ID: 420400, updated on 3-Dec-2024

    Summary

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    Symbol
    JMJD4provided by CGNC
    Full Name
    jumonji domain containing 4provided by CGNC
    Primary source
    CGNC:4036
    See related
    Ensembl:ENSGALG00010024874
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See JMJD4 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (3240992..3250025)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (3244827..3253879)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417716 Neighboring gene synaptosomal associated protein 47 Neighboring gene ALS2 C-terminal like Neighboring gene microRNA 1639 Neighboring gene transmembrane inner ear

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone H4R3 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translational termination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-oxoglutarate and iron-dependent oxygenase JMJD4
    Names
    jmjC domain-containing protein 4
    jumonji domain-containing protein 4
    lysyl-hydroxylase JMJD4
    NP_001026130.2
    XP_015136573.1
    XP_046766813.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030959.2 → NP_001026130.2  2-oxoglutarate and iron-dependent oxygenase JMJD4

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000035
      UniProtKB/Swiss-Prot
      Q5ZHV5
      UniProtKB/TrEMBL
      F1NX61
      Conserved Domains (1) summary
      cl40423
      Location:41 → 283
      cupin_RmlC-like; RmlC-like cupin superfamily

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      3240992..3250025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015281087.4 → XP_015136573.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHV5
      UniProtKB/TrEMBL
      F1NX61
      Related
      ENSGALP00010037487.1, ENSGALT00010060728.1
      Conserved Domains (1) summary
      cl40423
      Location:41 → 283
      cupin_RmlC-like; RmlC-like cupin superfamily

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      3244827..3253879
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046910857.1 → XP_046766813.1  2-oxoglutarate and iron-dependent oxygenase JMJD4 isoform X1

      UniProtKB/Swiss-Prot
      Q5ZHV5
      UniProtKB/TrEMBL
      F1NX61
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZHV5.1 GenPept UniProtKB/Swiss-Prot:Q5ZHV5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.