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    KDM1A lysine demethylase 1A [ Gallus gallus (chicken) ]

    Gene ID: 419571, updated on 17-Aug-2024

    Summary

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    Symbol
    KDM1Aprovided by CGNC
    Full Name
    lysine demethylase 1Aprovided by CGNC
    Primary source
    CGNC:547
    See related
    Ensembl:ENSGALG00010014192
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    AOF2
    Orthologs
    human mouse all
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    Genomic context

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    See KDM1A in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 23 NC_052554.1 (2062620..2092723, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 23 NC_052595.1 (1831481..1861611, complement)

    Chromosome 23 - NC_052554.1Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 1D Neighboring gene uncharacterized LOC121107469 Neighboring gene leucine zipper protein 1 Neighboring gene zinc metallopeptidase STE24 Neighboring gene rearranged L-myc fusion

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific histone demethylase 1A; LOW QUALITY PROTEIN: lysine-specific histone demethylase 1A
    Names
    amine oxidase (flavin containing) domain 2
    lysine (K)-specific demethylase 1A
    XP_040546035.1
    XP_040546036.1
    XP_417719.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052554.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      2062620..2092723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_417719.8 → XP_417719.6  LOW QUALITY PROTEIN: lysine-specific histone demethylase 1A isoform X1

      UniProtKB/TrEMBL
      A0A8V0YV16
      Related
      ENSGALP00010020107.1, ENSGALT00010034225.1
      Conserved Domains (1) summary
      PLN02328
      Location:177 → 819
      PLN02328; lysine-specific histone demethylase 1 homolog

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052595.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      1831481..1861611 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040690102.1 → XP_040546036.1  lysine-specific histone demethylase 1A isoform X2

      UniProtKB/TrEMBL
      A0A8V0YV16
      Conserved Domains (1) summary
      PLN02328
      Location:157 → 799
      PLN02328; lysine-specific histone demethylase 1 homolog

    2. XM_040690101.1 → XP_040546035.1  lysine-specific histone demethylase 1A isoform X1

      UniProtKB/TrEMBL
      A0A8V0YV16
      Conserved Domains (1) summary
      PLN02328
      Location:177 → 819
      PLN02328; lysine-specific histone demethylase 1 homolog
    Nucleotide Protein Strain
    Heading Accession and Version

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