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    ATRNL1 attractin like 1 [ Gallus gallus (chicken) ]

    Gene ID: 423915, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ATRNL1provided by CGNC
    Official Full Name
    attractin like 1provided by CGNC
    Primary source
    CGNC:6963
    See related
    Ensembl:ENSGALG00010022603
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ATRNL1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (28927675..29347624)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (28818642..29238129)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101751655 Neighboring gene microRNA 1815 Neighboring gene uncharacterized LOC121111138 Neighboring gene GDNF family receptor alpha 1 Neighboring gene uncharacterized LOC121111137 Neighboring gene coiled-coil domain containing 172

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    attractin-like protein 1

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      28927675..29347624
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_421777.8 → XP_421777.4  attractin-like protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A3Q2UFR3, A0A8V0ZR12
      Related
      ENSGALP00010033297.1, ENSGALT00010055067.1
      Conserved Domains (8) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:892 → 941
      PSI; Plexin repeat
      pfam13418
      Location:471 → 517
      Kelch_4; Galactose oxidase, central domain
      pfam13854
      Location:355 → 395
      Kelch_5; Kelch motif
      cl19567
      Location:220 → 283
      DSL; Delta serrate ligand

    2. XM_004942302.5 → XP_004942359.1  attractin-like protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZR12, E1BYK5
      Related
      ENSGALP00010033301.1, ENSGALT00010055073.1
      Conserved Domains (8) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:892 → 941
      PSI; Plexin repeat
      pfam13418
      Location:471 → 517
      Kelch_4; Galactose oxidase, central domain
      pfam13854
      Location:355 → 395
      Kelch_5; Kelch motif
      cl19567
      Location:220 → 283
      DSL; Delta serrate ligand

    3. XM_015288928.4 → XP_015144414.1  attractin-like protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q2TWA8, A0A8V0ZR22
      Related
      ENSGALP00010033285.1, ENSGALT00010055049.1
      Conserved Domains (8) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:892 → 941
      PSI; Plexin repeat
      pfam13418
      Location:471 → 517
      Kelch_4; Galactose oxidase, central domain
      pfam13854
      Location:355 → 395
      Kelch_5; Kelch motif
      cl19567
      Location:220 → 283
      DSL; Delta serrate ligand

    4. XM_040702499.2 → XP_040558433.1  attractin-like protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZRQ6, A0A8V0ZRS3
      Related
      ENSGALP00010033264.1, ENSGALT00010055020.1
      Conserved Domains (7) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      PLN02153
      Location:457 → 603
      PLN02153; epithiospecifier protein
      PHA03098
      Location:313 → 579
      PHA03098; kelch-like protein; Provisional
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      cl19567
      Location:237 → 283
      DSL; Delta serrate ligand

    5. XM_004942303.5 → XP_004942360.1  attractin-like protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZRS3, A0A8V0ZWM2
      Related
      ENSGALP00010033267.1, ENSGALT00010055023.1
      Conserved Domains (8) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:892 → 941
      PSI; Plexin repeat
      pfam13418
      Location:471 → 517
      Kelch_4; Galactose oxidase, central domain
      pfam13854
      Location:355 → 395
      Kelch_5; Kelch motif
      cl19567
      Location:220 → 283
      DSL; Delta serrate ligand

    6. XM_025151794.3 → XP_025007562.1  attractin-like protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V0ZP54, A0A8V0ZWM7
      Related
      ENSGALP00010033272.1, ENSGALT00010055031.1
      Conserved Domains (9) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:892 → 941
      PSI; Plexin repeat
      pfam13415
      Location:317 → 366
      Kelch_3; Galactose oxidase, central domain
      pfam13854
      Location:355 → 395
      Kelch_5; Kelch motif
      cl19567
      Location:220 → 283
      DSL; Delta serrate ligand
      cl26061
      Location:457 → 603
      PLN02193; nitrile-specifier protein

    7. XM_015288929.4 → XP_015144415.1  attractin-like protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A3Q2TWA8
      Conserved Domains (8) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:892 → 941
      PSI; Plexin repeat
      pfam13418
      Location:471 → 517
      Kelch_4; Galactose oxidase, central domain
      pfam13854
      Location:355 → 395
      Kelch_5; Kelch motif
      cl19567
      Location:220 → 283
      DSL; Delta serrate ligand

    8. XM_025151795.3 → XP_025007563.1  attractin-like protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A3Q2TWA8
      Conserved Domains (9) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      pfam01437
      Location:892 → 941
      PSI; Plexin repeat
      pfam13415
      Location:317 → 366
      Kelch_3; Galactose oxidase, central domain
      pfam13854
      Location:355 → 395
      Kelch_5; Kelch motif
      cl19567
      Location:220 → 283
      DSL; Delta serrate ligand
      cl26061
      Location:457 → 603
      PLN02193; nitrile-specifier protein

    9. XM_046943130.1 → XP_046799086.1  attractin-like protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A3Q2TWA8
      Related
      ENSGALP00010033262.1, ENSGALT00010055014.1

    RNA

    1. XR_003075754.3 RNA Sequence

    2. XR_003075755.3 RNA Sequence

    3. XR_001467269.4 RNA Sequence

    4. XR_001467268.4 RNA Sequence

    5. XR_001467270.4 RNA Sequence

    6. XR_006939609.1 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      28818642..29238129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040674170.2 → XP_040530104.1  attractin-like protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A8V0ZR12
      Conserved Domains (7) summary
      cd03597
      Location:751 → 877
      CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
      PLN02153
      Location:457 → 603
      PLN02153; epithiospecifier protein
      PHA03098
      Location:313 → 579
      PHA03098; kelch-like protein; Provisional
      cd00041
      Location:96 → 211
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd00055
      Location:1016 → 1061
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      sd00038
      Location:471 → 520
      Kelch; KELCH repeat [structural motif]
      cl19567
      Location:237 → 283
      DSL; Delta serrate ligand
    Nucleotide Protein
    Heading Accession and Version

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