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    CCDC88B coiled-coil domain containing 88B [ Gallus gallus (chicken) ]

    Gene ID: 423410, updated on 17-Aug-2024

    Summary

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    Symbol
    CCDC88Bprovided by CGNC
    Full Name
    coiled-coil domain containing 88Bprovided by CGNC
    Primary source
    CGNC:8143
    See related
    Ensembl:ENSGALG00010016912
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    CCDC88C
    Orthologs
    human mouse all
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    Genomic context

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    See CCDC88B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (43772539..43856662, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (43741323..43825332, complement)

    Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase A5 Neighboring gene C14orf159 homolog Neighboring gene G protein-coupled receptor 4 Neighboring gene protein phosphatase 4 regulatory subunit 3A Neighboring gene uncharacterized LOC121110930

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dynein light intermediate chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton-dependent intracellular transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in centrosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein Daple
    Names
    coiled-coil domain containing 88C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      43772539..43856662 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025151373.3 → XP_025007141.2  protein Daple isoform X3

      Conserved Domains (2) summary
      COG1196
      Location:246 → 612
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:466 → 1341
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_015287749.3 → XP_015143235.2  protein Daple isoform X4

      UniProtKB/TrEMBL
      A0A8V0YYC2
      Related
      ENSGALP00010023786.1, ENSGALT00010040822.1
      Conserved Domains (1) summary
      COG1196
      Location:464 → 1387
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_004941868.5 → XP_004941925.2  protein Daple isoform X1

      UniProtKB/TrEMBL
      A0A8V0YYQ5
      Related
      ENSGALP00010023783.1, ENSGALT00010040819.1
      Conserved Domains (1) summary
      COG1196
      Location:464 → 1387
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. XM_046942416.1 → XP_046798372.1  protein Daple isoform X2

    5. XM_046942417.1 → XP_046798373.1  protein Daple isoform X5

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      43741323..43825332 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040672989.2 → XP_040528923.1  protein Daple isoform X3

      Conserved Domains (2) summary
      COG1196
      Location:246 → 612
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:466 → 1341
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_040672990.2 → XP_040528924.1  protein Daple isoform X4

      UniProtKB/TrEMBL
      A0A8V0YYC2
      Conserved Domains (1) summary
      COG1196
      Location:464 → 1387
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_040672988.2 → XP_040528922.1  protein Daple isoform X1

      UniProtKB/TrEMBL
      A0A8V0YYQ5
      Conserved Domains (1) summary
      COG1196
      Location:464 → 1387
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. XM_046919408.1 → XP_046775364.1  protein Daple isoform X2

    5. XM_046919409.1 → XP_046775365.1  protein Daple isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

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