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    PQLC1 PQ loop repeat containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 428474, updated on 3-Dec-2024

    Summary

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    Symbol
    PQLC1provided by CGNC
    Full Name
    PQ loop repeat containing 1provided by CGNC
    Primary source
    CGNC:9599
    See related
    Ensembl:ENSGALG00010008184
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PQLC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (55918319..55991789)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (55819371..55892775)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene probable 2-ketogluconate reductase-like Neighboring gene uncharacterized LOC121113119 Neighboring gene thioredoxin like 4A Neighboring gene protein PXR1-like Neighboring gene heat shock factor binding protein 1 like 1 Neighboring gene microRNA 7458-1 Neighboring gene potassium voltage-gated channel modifier subfamily G member 2 Neighboring gene uncharacterized LOC121109607 Neighboring gene CTD phosphatase subunit 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PQ-loop repeat-containing protein 1; solute carrier family 66 member 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      55918319..55991789
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025147626.3 → XP_025003394.1  solute carrier family 66 member 2 isoform X1

      Conserved Domains (1) summary
      pfam04193
      Location:365 → 422
      PQ-loop; PQ loop repeat

    2. XM_025147627.3 → XP_025003395.1  solute carrier family 66 member 2 isoform X2

      Conserved Domains (1) summary
      pfam04193
      Location:347 → 404
      PQ-loop; PQ loop repeat

    3. XM_025147628.3 → XP_025003396.1  solute carrier family 66 member 2 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Y171
      Related
      ENSGALP00010011110.1, ENSGALT00010019562.1
      Conserved Domains (1) summary
      pfam04193
      Location:259 → 316
      PQ-loop; PQ loop repeat

    4. XM_426032.7 → XP_426032.2  solute carrier family 66 member 2 isoform X8

      UniProtKB/TrEMBL
      A0A3Q2U1K3, A0A8V0Y161
      Related
      ENSGALP00010011117.1, ENSGALT00010019569.1
      Conserved Domains (1) summary
      pfam04193
      Location:170 → 230
      PQ-loop; PQ loop repeat

    5. XM_046938116.1 → XP_046794072.1  solute carrier family 66 member 2 isoform X10

      UniProtKB/TrEMBL
      A0A8V0XSC2, A0A8V0Y4X7
      Related
      ENSGALP00010011108.1, ENSGALT00010019560.1

    6. XM_004935086.5 → XP_004935143.1  solute carrier family 66 member 2 isoform X9

      UniProtKB/TrEMBL
      A0A8V0Y161, A0A8V0Y176
      Related
      ENSGALP00010011115.1, ENSGALT00010019567.1
      Conserved Domains (1) summary
      pfam04193
      Location:152 → 212
      PQ-loop; PQ loop repeat

    7. XM_025147630.3 → XP_025003398.1  solute carrier family 66 member 2 isoform X6

    8. XM_025147631.3 → XP_025003399.1  solute carrier family 66 member 2 isoform X7

    9. XM_025147629.3 → XP_025003397.1  solute carrier family 66 member 2 isoform X5

    10. XM_046938115.1 → XP_046794071.1  solute carrier family 66 member 2 isoform X4

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      55819371..55892775
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040663211.2 → XP_040519145.2  solute carrier family 66 member 2 isoform X11

    2. XM_040663217.2 → XP_040519151.2  solute carrier family 66 member 2 isoform X13

    3. XM_040663214.2 → XP_040519148.2  solute carrier family 66 member 2 isoform X12

    4. XM_040663212.2 → XP_040519146.1  solute carrier family 66 member 2 isoform X8

      UniProtKB/TrEMBL
      A0A3Q2U1K3, A0A8V0Y161
      Conserved Domains (1) summary
      pfam04193
      Location:170 → 230
      PQ-loop; PQ loop repeat

    5. XM_040663215.2 → XP_040519149.1  solute carrier family 66 member 2 isoform X9

      UniProtKB/TrEMBL
      A0A8V0Y161, A0A8V0Y176
      Conserved Domains (1) summary
      pfam04193
      Location:152 → 212
      PQ-loop; PQ loop repeat

    6. XM_046912606.1 → XP_046768562.1  solute carrier family 66 member 2 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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