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    HELZ helicase with zinc finger [ Gallus gallus (chicken) ]

    Gene ID: 417427, updated on 3-Dec-2024

    Summary

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    Symbol
    HELZprovided by CGNC
    Full Name
    helicase with zinc fingerprovided by CGNC
    Primary source
    CGNC:14565
    See related
    Ensembl:ENSGALG00010029204
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See HELZ in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 18 NC_052549.1 (7778891..7852810)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 18 NC_052590.1 (7373724..7447683)

    Chromosome 18 - NC_052549.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein cytoplasmic 1 Neighboring gene uncharacterized LOC101752088 Neighboring gene proteasome 26S subunit, non-ATPase 12 Neighboring gene uncharacterized LOC112530018 Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 1 Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable helicase with zinc finger domain
    XP_003642394.3
    XP_004946278.2
    XP_004946279.2
    XP_015135460.2
    XP_024997420.2
    XP_024997421.2
    XP_040542302.1
    XP_040542303.1
    XP_040542304.1
    XP_040542305.1
    XP_040542306.1
    XP_040542307.1
    XP_046758113.1
    XP_046785750.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052549.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      7778891..7852810
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046902157.1 → XP_046758113.1  probable helicase with zinc finger domain isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIQ6

    2. XM_003642346.6 → XP_003642394.3  probable helicase with zinc finger domain isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1349 → 1470
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:868 → 1068
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:640 → 867
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    3. XM_004946221.5 → XP_004946278.2  probable helicase with zinc finger domain isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIQ6, A0A8V1AKU6
      Related
      ENSGALP00010043269.1, ENSGALT00010070578.1
      Conserved Domains (3) summary
      PRK10263
      Location:1348 → 1469
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:867 → 1067
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:640 → 866
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    4. XM_015279974.4 → XP_015135460.2  probable helicase with zinc finger domain isoform X5

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Related
      ENSGALP00010043265.1, ENSGALT00010070574.1
      Conserved Domains (3) summary
      PRK10263
      Location:1248 → 1369
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:767 → 967
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:539 → 766
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    5. XM_004946222.5 → XP_004946279.2  probable helicase with zinc finger domain isoform X3

      UniProtKB/TrEMBL
      A0A8V1AIQ6, A0A8V1AMJ4
      Related
      ENSGALP00010043267.1, ENSGALT00010070576.1
      Conserved Domains (3) summary
      PRK10263
      Location:1269 → 1390
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:788 → 988
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:560 → 787
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    6. XM_025141653.3 → XP_024997421.2  probable helicase with zinc finger domain isoform X4

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1268 → 1389
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:787 → 987
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:560 → 786
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    7. XM_025141652.3 → XP_024997420.2  probable helicase with zinc finger domain isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1349 → 1470
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:868 → 1068
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:640 → 867
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052590.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      7373724..7447683
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046929794.1 → XP_046785750.1  probable helicase with zinc finger domain isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIQ6

    2. XM_040686368.2 → XP_040542302.1  probable helicase with zinc finger domain isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1349 → 1470
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:868 → 1068
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:640 → 867
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    3. XM_040686370.2 → XP_040542304.1  probable helicase with zinc finger domain isoform X2

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1348 → 1469
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:867 → 1067
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:640 → 866
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    4. XM_040686373.2 → XP_040542307.1  probable helicase with zinc finger domain isoform X5

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1248 → 1369
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:767 → 967
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:539 → 766
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    5. XM_040686371.2 → XP_040542305.1  probable helicase with zinc finger domain isoform X3

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1269 → 1390
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:788 → 988
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:560 → 787
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    6. XM_040686372.2 → XP_040542306.1  probable helicase with zinc finger domain isoform X4

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1268 → 1389
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:787 → 987
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:560 → 786
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ

    7. XM_040686369.2 → XP_040542303.1  probable helicase with zinc finger domain isoform X1

      UniProtKB/TrEMBL
      A0A8V1AIQ6
      Conserved Domains (3) summary
      PRK10263
      Location:1349 → 1470
      PRK10263; DNA translocase FtsK; Provisional
      cd18808
      Location:868 → 1068
      SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
      cd18077
      Location:640 → 867
      DEXXQc_HELZ; DEXXQ-box helicase domain of HELZ
    Nucleotide Protein
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