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    USP9 ubiquitin specific peptidase 9 [ Gallus gallus (chicken) ]

    Gene ID: 418569, updated on 3-Dec-2024

    Summary

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    Official Symbol
    USP9provided by CGNC
    Official Full Name
    ubiquitin specific peptidase 9provided by CGNC
    Primary source
    CGNC:50795
    See related
    Ensembl:ENSGALG00010002504
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    USP9X; USP9Y
    Orthologs
    human mouse all
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    Genomic context

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    See USP9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    47
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (112176883..112275311, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (112231033..112329525, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750611 Neighboring gene ribosomal protein L8 Neighboring gene translation initiation factor IF-2 Neighboring gene uncharacterized LOC101750779 Neighboring gene uncharacterized LOC107056757

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ubiquitin carboxyl-terminal hydrolase FAF-X
    Names
    ubiquitin specific peptidase 9 X-linked
    ubiquitin specific peptidase 9, Y-linked
    XP_015157219.1
    XP_015157224.1
    XP_015157228.1
    XP_040517727.1
    XP_040517728.1
    XP_040517729.1
    XP_040517730.1
    XP_040520949.1
    XP_046765794.1
    XP_046767518.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      112176883..112275311 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015301738.4 → XP_015157224.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2

      UniProtKB/TrEMBL
      V9GVG9
      Conserved Domains (3) summary
      cd02659
      Location:1550 → 1952
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam12030
      Location:2091 → 2470
      DUF3517; Domain of unknown function (DUF3517)
      cl28922
      Location:881 → 964
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. XM_015301733.4 → XP_015157219.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1

      UniProtKB/TrEMBL
      E1BWJ5, V9GVG9
      Related
      ENSGALP00010003580.1, ENSGALT00010005764.1
      Conserved Domains (3) summary
      cd02659
      Location:1555 → 1957
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam12030
      Location:2096 → 2475
      DUF3517; Domain of unknown function (DUF3517)
      cl28922
      Location:881 → 964
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    3. XM_046911562.1 → XP_046767518.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1

      UniProtKB/TrEMBL
      E1BWJ5, V9GVG9

    4. XM_040665015.2 → XP_040520949.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X4

      UniProtKB/TrEMBL
      A0A8V0X665, V9GVG9
      Related
      ENSGALP00010003582.1, ENSGALT00010005768.1
      Conserved Domains (2) summary
      cd02659
      Location:1555 → 1957
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:881 → 964
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    5. XM_015301742.4 → XP_015157228.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X3

      UniProtKB/TrEMBL
      V9GVG9
      Conserved Domains (3) summary
      cd02659
      Location:1555 → 1957
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam12030
      Location:2096 → 2475
      DUF3517; Domain of unknown function (DUF3517)
      cl28922
      Location:881 → 964
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      112231033..112329525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040661794.2 → XP_040517728.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X2

      UniProtKB/TrEMBL
      V9GVG9
      Conserved Domains (3) summary
      cd02659
      Location:1550 → 1952
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam12030
      Location:2091 → 2470
      DUF3517; Domain of unknown function (DUF3517)
      cl28922
      Location:881 → 964
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. XM_040661793.2 → XP_040517727.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1

      UniProtKB/TrEMBL
      E1BWJ5, V9GVG9
      Conserved Domains (3) summary
      cd02659
      Location:1555 → 1957
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam12030
      Location:2096 → 2475
      DUF3517; Domain of unknown function (DUF3517)
      cl28922
      Location:881 → 964
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    3. XM_046909838.1 → XP_046765794.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1

      UniProtKB/TrEMBL
      E1BWJ5, V9GVG9

    4. XM_040661796.2 → XP_040517730.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X4

      UniProtKB/TrEMBL
      A0A8V0X665, V9GVG9
      Conserved Domains (2) summary
      cd02659
      Location:1555 → 1957
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      cl28922
      Location:881 → 964
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    5. XM_040661795.2 → XP_040517729.1  probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X3

      UniProtKB/TrEMBL
      V9GVG9
      Conserved Domains (3) summary
      cd02659
      Location:1555 → 1957
      peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam12030
      Location:2096 → 2475
      DUF3517; Domain of unknown function (DUF3517)
      cl28922
      Location:881 → 964
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein Strain
    Heading Accession and Version

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