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    PLEKHB1 pleckstrin homology domain containing B1 [ Gallus gallus (chicken) ]

    Gene ID: 419064, updated on 3-Dec-2024

    Summary

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    Symbol
    PLEKHB1provided by CGNC
    Full Name
    pleckstrin homology domain containing B1provided by CGNC
    Primary source
    CGNC:13012
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PLEKHB1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (194949881..194957488, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (194815552..194823188, complement)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L48 Neighboring gene RAB6A, member RAS oncogene family Neighboring gene uncharacterized LOC112532796 Neighboring gene family with sequence similarity 168 member A Neighboring gene RELT tumor necrosis factor receptor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pleckstrin homology domain-containing family B member 1
    Names
    pleckstrin homology domain containing, family B (evectins) member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012546.2 → NP_001012564.1  pleckstrin homology domain-containing family B member 1

      See identical proteins and their annotated locations for NP_001012564.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000032
      UniProtKB/TrEMBL
      A0A8V0XE19, Q5F3E0
      Conserved Domains (2) summary
      cd13265
      Location:3 → 110
      PH_evt; Evectin Pleckstrin homology (PH) domain
      pfam00169
      Location:5 → 111
      PH; PH domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      194949881..194957488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015280975.4 → XP_015136461.1  pleckstrin homology domain-containing family B member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XE19, Q5F3E0
      Conserved Domains (2) summary
      cd13265
      Location:3 → 110
      PH_evt; Evectin Pleckstrin homology (PH) domain
      pfam00169
      Location:5 → 111
      PH; PH domain

    2. XM_046942198.1 → XP_046798154.1  pleckstrin homology domain-containing family B member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XE19, Q5F3E0

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      194815552..194823188 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046908382.1 → XP_046764338.1  pleckstrin homology domain-containing family B member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XE19, Q5F3E0

    2. XM_046908383.1 → XP_046764339.1  pleckstrin homology domain-containing family B member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XE19, Q5F3E0
    Nucleotide Protein Strain
    Heading Accession and Version

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