U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AHR2 aryl hydrocarbon receptor 2 [ Gallus gallus (chicken) ]

    Gene ID: 424033, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AHR2provided by CGNC
    Official Full Name
    aryl hydrocarbon receptor 2provided by CGNC
    Primary source
    CGNC:52116
    See related
    Ensembl:ENSGALG00010013824
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AHR2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (6627328..6655527)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (6568072..6596295)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053772 Neighboring gene NADH:ubiquinone oxidoreductase subunit A10 Neighboring gene uncharacterized LOC124418107 Neighboring gene uncharacterized LOC121111302 Neighboring gene microRNA 1845 Neighboring gene aryl hydrocarbon receptor 1 beta Neighboring gene collagen, type XVIII, alpha 1 Neighboring gene solute carrier family 19 member 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Molecular and functional characterization of a novel aryl hydrocarbon receptor isoform, AHR1β, in the chicken (Gallus gallus). Lee JS, et al. Toxicol Sci, 2013 Dec. PMID 23997109
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of aryl hydrocarbon receptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    aryl hydrocarbon receptor 2
    Names
    aryl hydrocarbon receptor-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001319008.2 → NP_001305937.2  aryl hydrocarbon receptor 2

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000235
      UniProtKB/TrEMBL
      A0A0A0V9I6, A0A8V0YFJ5, E1C4K6
      Related
      ENSGALP00010019611.1, ENSGALT00010033189.1

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6627328..6655527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046943556.1 → XP_046799512.1  aryl hydrocarbon receptor 2 isoform X3

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6

    2. XM_040703391.2 → XP_040559325.1  aryl hydrocarbon receptor 2 isoform X1

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6
      Conserved Domains (3) summary
      smart00091
      Location:99 → 160
      PAS; PAS domain
      pfam08447
      Location:272 → 346
      PAS_3; PAS fold
      cd19696
      Location:9 → 66
      bHLH-PAS_AhR_like; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in the aryl hydrocarbon receptor (AhR) family

    3. XM_040703392.2 → XP_040559326.1  aryl hydrocarbon receptor 2 isoform X4

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6
      Conserved Domains (2) summary
      smart00091
      Location:36 → 97
      PAS; PAS domain
      pfam08447
      Location:209 → 283
      PAS_3; PAS fold

    4. XM_015289246.4 → XP_015144732.1  aryl hydrocarbon receptor 2 isoform X2

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6
      Conserved Domains (4) summary
      smart00086
      Location:302 → 343
      PAC; Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
      cd00083
      Location:36 → 77
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      cd00130
      Location:261 → 321
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam14598
      Location:241 → 345
      PAS_11; PAS domain

    5. XM_040703393.1 → XP_040559327.1  aryl hydrocarbon receptor 2 isoform X5

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6
      Conserved Domains (1) summary
      pfam08447
      Location:146 → 220
      PAS_3; PAS fold

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6568072..6596295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046921274.1 → XP_046777230.1  aryl hydrocarbon receptor 2 isoform X3

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6

    2. XM_046921272.1 → XP_046777228.1  aryl hydrocarbon receptor 2 isoform X1

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6

    3. XM_046921275.1 → XP_046777231.1  aryl hydrocarbon receptor 2 isoform X4

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6

    4. XM_046921273.1 → XP_046777229.1  aryl hydrocarbon receptor 2 isoform X2

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6

    5. XM_046921276.1 → XP_046777232.1  aryl hydrocarbon receptor 2 isoform X5

      UniProtKB/TrEMBL
      A0A0A0V9I6, E1C4K6
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials