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    RFLNB refilin B [ Gallus gallus (chicken) ]

    Gene ID: 417623, updated on 17-Aug-2024

    Summary

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    Symbol
    RFLNBprovided by CGNC
    Full Name
    refilin Bprovided by CGNC
    Primary source
    CGNC:3637
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    FAM101B
    Orthologs
    human mouse all
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    Genomic context

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    See RFLNB in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 19 NC_052550.1 (7472382..7479019)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 19 NC_052591.1 (7209364..7216006)

    Chromosome 19 - NC_052550.1Genomic Context describing neighboring genes Neighboring gene glyoxalase domain containing 4 Neighboring gene gem nuclear organelle associated protein 4 Neighboring gene family with sequence similarity 57 member A Neighboring gene VPS53 subunit of GARP complex Neighboring gene uncharacterized LOC107054807 Neighboring gene rabphilin 3A-like (without C2 domains) Neighboring gene double C2 domain beta Neighboring gene opsin, pineal

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables filamin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of bone mineralization involved in bone maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of chondrocyte development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in skeletal system morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    refilin-B
    Names
    family with sequence similarity 101 member B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052550.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      7472382..7479019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015296121.4 → XP_015151607.2  refilin-B isoform X2

    2. XM_415867.8 → XP_415867.3  refilin-B isoform X1

      UniProtKB/TrEMBL
      E1BVJ1
      Conserved Domains (1) summary
      pfam15068
      Location:1 → 204
      FAM101; FAM101 family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052591.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      7209364..7216006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040687421.2 → XP_040543355.1  refilin-B isoform X2

    2. XM_040687420.2 → XP_040543354.1  refilin-B isoform X1

      Conserved Domains (1) summary
      pfam15068
      Location:1 → 204
      FAM101; FAM101 family
    Nucleotide Protein
    Heading Accession and Version

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