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    PTPDC1 protein tyrosine phosphatase domain containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 415979, updated on 3-Dec-2024

    Summary

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    Symbol
    PTPDC1provided by CGNC
    Full Name
    protein tyrosine phosphatase domain containing 1provided by CGNC
    Primary source
    CGNC:3818
    See related
    Ensembl:ENSGALG00010027667
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PTPDC1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (6286870..6305523, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (6313489..6332140, complement)

    Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112533383 Neighboring gene uncharacterized LOC121106652 Neighboring gene uncharacterized LOC107054448 Neighboring gene microRNA let-7f-1 Neighboring gene microRNA let-7f-2 Neighboring gene uncharacterized LOC124417165 Neighboring gene BARX homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein tyrosine/serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein tyrosine phosphatase domain-containing protein 1
    XP_004944597.2
    XP_004944601.2
    XP_004944604.1
    XP_040502612.1
    XP_040502613.1
    XP_040538063.1
    XP_040538064.1
    XP_040538065.1
    XP_040538066.1
    XP_040538067.1
    XP_040538068.1
    XP_046756069.1
    XP_046756070.1
    XP_046756071.1
    XP_046782598.1
    XP_046782599.1
    XP_046782600.1
    XP_414322.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      6286870..6305523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040646679.2 → XP_040502613.1  protein tyrosine phosphatase domain-containing protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A3Q3A4X3
      Conserved Domains (1) summary
      cd14506
      Location:77 → 282
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    2. XM_004944547.5 → XP_004944604.1  protein tyrosine phosphatase domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q3A4X3, E1C6I5
      Related
      ENSGALP00010041006.1, ENSGALT00010067081.1
      Conserved Domains (1) summary
      cd14506
      Location:77 → 282
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    3. XM_046900114.1 → XP_046756070.1  protein tyrosine phosphatase domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V1ACN4

    4. XM_004944544.5 → XP_004944601.2  protein tyrosine phosphatase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q3A4X3
      Conserved Domains (1) summary
      cd14506
      Location:159 → 364
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    5. XM_004944540.5 → XP_004944597.2  protein tyrosine phosphatase domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ACN4
      Conserved Domains (1) summary
      cd14506
      Location:159 → 364
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    6. XM_046900115.1 → XP_046756071.1  protein tyrosine phosphatase domain-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A3Q3A4X3

    7. XM_046900113.1 → XP_046756069.1  protein tyrosine phosphatase domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A3Q3A4X3

    8. XM_414322.8 → XP_414322.2  protein tyrosine phosphatase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1ACN4, A0A8V1AH94
      Related
      ENSGALP00010041000.1, ENSGALT00010067070.1
      Conserved Domains (1) summary
      cd14506
      Location:120 → 325
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    9. XM_040646678.2 → XP_040502612.1  protein tyrosine phosphatase domain-containing protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8V1AFA4
      Conserved Domains (1) summary
      cd14506
      Location:159 → 364
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      6313489..6332140 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040682134.2 → XP_040538068.1  protein tyrosine phosphatase domain-containing protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A3Q3A4X3
      Conserved Domains (1) summary
      cd14506
      Location:77 → 282
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    2. XM_040682132.2 → XP_040538066.1  protein tyrosine phosphatase domain-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A3Q3A4X3, E1C6I5
      Conserved Domains (1) summary
      cd14506
      Location:77 → 282
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    3. XM_046926643.1 → XP_046782599.1  protein tyrosine phosphatase domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8V1ACN4

    4. XM_040682131.2 → XP_040538065.1  protein tyrosine phosphatase domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q3A4X3
      Conserved Domains (1) summary
      cd14506
      Location:159 → 364
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    5. XM_040682129.2 → XP_040538063.1  protein tyrosine phosphatase domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1ACN4
      Conserved Domains (1) summary
      cd14506
      Location:159 → 364
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    6. XM_046926644.1 → XP_046782600.1  protein tyrosine phosphatase domain-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A3Q3A4X3

    7. XM_046926642.1 → XP_046782598.1  protein tyrosine phosphatase domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A3Q3A4X3

    8. XM_040682130.2 → XP_040538064.1  protein tyrosine phosphatase domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1ACN4, A0A8V1AH94
      Conserved Domains (1) summary
      cd14506
      Location:120 → 325
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1

    9. XM_040682133.2 → XP_040538067.1  protein tyrosine phosphatase domain-containing protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8V1AFA4
      Conserved Domains (1) summary
      cd14506
      Location:159 → 364
      PTP_PTPDC1; protein tyrosine phosphatase domain of PTP domain-containing protein 1
    Nucleotide Protein
    Heading Accession and Version

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