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    WHAMM WAS protein homolog associated with actin, golgi membranes and microtubules [ Gallus gallus (chicken) ]

    Gene ID: 415457, updated on 17-Aug-2024

    Summary

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    Symbol
    WHAMMprovided by CGNC
    Full Name
    WAS protein homolog associated with actin, golgi membranes and microtubulesprovided by CGNC
    Primary source
    CGNC:4494
    See related
    Ensembl:ENSGALG00010017658
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    WHDC1
    Orthologs
    human mouse all
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    Genomic context

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    See WHAMM in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (11109284..11122024)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (10957147..10995387)

    Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 8A Neighboring gene small Cajal body-specific RNA 15 Neighboring gene fibronectin type III and SPRY domain containing 2 Neighboring gene uncharacterized LOC124417114 Neighboring gene homer scaffolding protein 2 Neighboring gene serine/arginine repetitive matrix protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Arp2/3 complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Arp2/3 complex-mediated actin nucleation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WASP homolog-associated protein with actin, membranes and microtubules
    Names
    WAS protein homology region 2 domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      11109284..11122024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040706772.2 → XP_040562706.1  WASP homolog-associated protein with actin, membranes and microtubules isoform X2

      Conserved Domains (2) summary
      PRK05667
      Location:197 → 446
      dnaG; DNA primase; Validated
      cl19096
      Location:24 → 192
      Flavin_utilizing_monoxygenases; Flavin-utilizing monoxygenases

    2. XM_413835.8 → XP_413835.3  WASP homolog-associated protein with actin, membranes and microtubules isoform X1

      UniProtKB/TrEMBL
      A0A8V0YVR2
      Related
      ENSGALP00010025165.1, ENSGALT00010042675.1
      Conserved Domains (2) summary
      PRK05667
      Location:197 → 446
      dnaG; DNA primase; Validated
      cl19096
      Location:24 → 192
      Flavin_utilizing_monoxygenases; Flavin-utilizing monoxygenases

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      10957147..10995387
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040680303.2 → XP_040536237.1  WASP homolog-associated protein with actin, membranes and microtubules isoform X1

      Conserved Domains (3) summary
      COG1196
      Location:310 → 524
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      cl12363
      Location:244 → 400
      PrgH; Type III secretion system protein PrgH-EprH (PrgH)
      cl19096
      Location:24 → 192
      Flavin_utilizing_monoxygenases; Flavin-utilizing monoxygenases
    Nucleotide Protein
    Heading Accession and Version

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