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    HMGN5 high mobility group nucleosome binding domain 5 [ Gallus gallus (chicken) ]

    Gene ID: 422278, updated on 17-Aug-2024

    Summary

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    Symbol
    HMGN5provided by CGNC
    Full Name
    high mobility group nucleosome binding domain 5provided by CGNC
    Primary source
    CGNC:51685
    See related
    Ensembl:ENSGALG00010019040
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
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    Genomic context

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    See HMGN5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (9341048..9349926)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (9375065..9383927)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101750621 Neighboring gene SH3 domain binding glutamate rich protein like Neighboring gene uncharacterized LOC121110601 Neighboring gene formin-like protein 16 Neighboring gene bromodomain and WD repeat domain containing 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The gene encoding chicken chromosomal protein HMG-14a is transcribed into multiple mRNAs. Browne DL, et al. Gene, 1993 Feb 28. PMID 8444343
    2. Chicken chromosomal protein HMG-14 and HMG-17 cDNA clones: isolation, characterization and sequence comparison. Dodgson JB, et al. Gene, 1988 Mar 31. PMID 3384337
    3. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
    4. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-histone chromosomal protein HMG-14A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396397.1 → NP_001383326.1  non-histone chromosomal protein HMG-14A

      Status: VALIDATED

      Source sequence(s)
      BU353919, CN225857, DR429987, HAEK01000207, HAEK01042735
      UniProtKB/Swiss-Prot
      P12902
      UniProtKB/TrEMBL
      A3RKL2, X1WI10
      Conserved Domains (1) summary
      pfam01101
      Location:1 → 99
      HMG14_17; HMG14 and HMG17

    2. NM_001396574.1 → NP_001383503.1  non-histone chromosomal protein HMG-14A

      Status: VALIDATED

      Source sequence(s)
      CN225857, CV037108, EF422210
      UniProtKB/Swiss-Prot
      P12902
      UniProtKB/TrEMBL
      A3RKL2, X1WI10
      Conserved Domains (1) summary
      pfam01101
      Location:1 → 99
      HMG14_17; HMG14 and HMG17

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      9341048..9349926
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015278521.4 → XP_015134007.1  non-histone chromosomal protein HMG-14A isoform X1

      UniProtKB/Swiss-Prot
      P12902
      UniProtKB/TrEMBL
      A3RKL2, X1WI10
      Related
      ENSGALP00010027482.1, ENSGALT00010046104.1
      Conserved Domains (1) summary
      pfam01101
      Location:1 → 99
      HMG14_17; HMG14 and HMG17

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      9375065..9383927
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670257.2 → XP_040526191.1  non-histone chromosomal protein HMG-14A isoform X1

      UniProtKB/Swiss-Prot
      P12902
      UniProtKB/TrEMBL
      A3RKL2, X1WI10
      Conserved Domains (1) summary
      pfam01101
      Location:1 → 99
      HMG14_17; HMG14 and HMG17

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001079480.2: Suppressed sequence

      Description
      NM_001079480.2: This RefSeq record was removed by NCBI staff. Contact [email protected] for further information.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P12902.2 GenPept UniProtKB/Swiss-Prot:P12902

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials