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    CARF calcium responsive transcription factor [ Gallus gallus (chicken) ]

    Gene ID: 424090, updated on 3-Dec-2024

    Summary

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    Symbol
    CARFprovided by CGNC
    Full Name
    calcium responsive transcription factorprovided by CGNC
    Primary source
    CGNC:6426
    See related
    Ensembl:ENSGALG00010025262
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    ALS2CR8
    Orthologs
    human mouse all
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    Genomic context

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    See CARF in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (11598924..11635638)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (11519647..11553043)

    Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 117 member B Neighboring gene WD repeat domain 12 Neighboring gene pleckstrin homology domain containing M3 Neighboring gene uncharacterized LOC121111271 Neighboring gene frizzled class receptor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-responsive transcription factor
    Names
    amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      11598924..11635638
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025152600.3 → XP_025008368.2  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      A0A8V1A247

    2. XM_015289503.4 → XP_015144989.2  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      A0A8V1A247
      Related
      ENSGALP00010038079.1, ENSGALT00010061664.1

    3. XM_025152601.3 → XP_025008369.1  calcium-responsive transcription factor isoform X3

      Conserved Domains (1) summary
      pfam15299
      Location:219 → 446
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    4. XM_025152602.3 → XP_025008370.1  calcium-responsive transcription factor isoform X4

      Conserved Domains (1) summary
      pfam15299
      Location:219 → 446
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    5. XM_015289502.4 → XP_015144988.1  calcium-responsive transcription factor isoform X2

      Conserved Domains (1) summary
      pfam15299
      Location:219 → 446
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    6. XM_025152603.2 → XP_025008371.2  calcium-responsive transcription factor isoform X5

    RNA

    1. XR_005861487.2 RNA Sequence

    2. XR_006939868.1 RNA Sequence

    3. XR_006939869.1 RNA Sequence

    4. XR_006939870.1 RNA Sequence

    5. XR_006939867.1 RNA Sequence

    6. XR_212605.5 RNA Sequence

    7. XR_005861489.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      11519647..11553043
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040676163.2 → XP_040532097.1  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      A0A8V1A247
      Conserved Domains (1) summary
      pfam15299
      Location:219 → 446
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    2. XM_040676168.2 → XP_040532102.1  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      A0A8V1A247
      Conserved Domains (1) summary
      pfam15299
      Location:219 → 446
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    3. XM_046922028.1 → XP_046777984.1  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      A0A8V1A247

    4. XM_046922027.1 → XP_046777983.1  calcium-responsive transcription factor isoform X1

      UniProtKB/TrEMBL
      A0A8V1A247

    5. XM_040676164.2 → XP_040532098.1  calcium-responsive transcription factor isoform X6

    6. XM_040676165.2 → XP_040532099.1  calcium-responsive transcription factor isoform X7

    7. XM_040676167.2 → XP_040532101.1  calcium-responsive transcription factor isoform X3

      Conserved Domains (1) summary
      pfam15299
      Location:219 → 446
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    8. XM_040676169.2 → XP_040532103.1  calcium-responsive transcription factor isoform X4

      Conserved Domains (1) summary
      pfam15299
      Location:219 → 446
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    9. XM_040676166.2 → XP_040532100.1  calcium-responsive transcription factor isoform X2

      Conserved Domains (1) summary
      pfam15299
      Location:219 → 446
      ALS2CR8; Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

    10. XM_040676170.1 → XP_040532104.1  calcium-responsive transcription factor isoform X5

    Nucleotide Protein
    Heading Accession and Version

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