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    RBM20 RNA binding motif protein 20 [ Gallus gallus (chicken) ]

    Gene ID: 423892, updated on 3-Dec-2024

    Summary

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    Symbol
    RBM20provided by CGNC
    Full Name
    RNA binding motif protein 20provided by CGNC
    Primary source
    CGNC:16458
    See related
    Ensembl:ENSGALG00010018455
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See RBM20 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (26825203..26919050)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (26716197..26810061)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 5 Neighboring gene structural maintenance of chromosomes 3 Neighboring gene uncharacterized LOC121111207 Neighboring gene uncharacterized LOC107053740 Neighboring gene programmed cell death 4 Neighboring gene uncharacterized LOC124418399 Neighboring gene uncharacterized LOC423893 Neighboring gene BBSome interacting protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable RNA-binding protein 20; RNA-binding protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      26825203..26919050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040702995.2 → XP_040558929.1  RNA-binding protein 20 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z613
      Related
      ENSGALP00010026590.1, ENSGALT00010044651.1
      Conserved Domains (3) summary
      PTZ00121
      Location:707 → 1091
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1109 → 1143
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:472 → 562
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    2. XM_015288973.4 → XP_015144459.2  RNA-binding protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z6L8
      Related
      ENSGALP00010026582.1, ENSGALT00010044642.1
      Conserved Domains (3) summary
      PTZ00121
      Location:748 → 1132
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1150 → 1184
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:512 → 602
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    3. XM_015288974.4 → XP_015144460.2  RNA-binding protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6L8
      Conserved Domains (3) summary
      PTZ00121
      Location:747 → 1131
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1149 → 1183
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:512 → 602
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    4. XM_015288975.4 → XP_015144461.2  RNA-binding protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z6L8
      Related
      ENSGALP00010026571.1, ENSGALT00010044627.1
      Conserved Domains (3) summary
      PTZ00121
      Location:746 → 1130
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1148 → 1182
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:510 → 600
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    5. XM_040702992.2 → XP_040558926.1  RNA-binding protein 20 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Z6L8
      Conserved Domains (3) summary
      PTZ00121
      Location:745 → 1129
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1147 → 1181
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:510 → 600
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    6. XM_040702993.2 → XP_040558927.1  RNA-binding protein 20 isoform X9

      UniProtKB/TrEMBL
      A0A8V0Z7J6
      Conserved Domains (3) summary
      PTZ00121
      Location:716 → 1100
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1118 → 1152
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:480 → 570
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    7. XM_046943357.1 → XP_046799313.1  RNA-binding protein 20 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Z7J6

    8. XM_046943355.1 → XP_046799311.1  RNA-binding protein 20 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Z7J6

    9. XM_046943356.1 → XP_046799312.1  RNA-binding protein 20 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Z7J6

    10. XM_015288977.4 → XP_015144463.2  RNA-binding protein 20 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Z6L3, A0A8V0Z7J6
      Related
      ENSGALP00010026577.1, ENSGALT00010044637.1
      Conserved Domains (3) summary
      PTZ00121
      Location:705 → 1089
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1107 → 1141
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:469 → 559
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    11. XM_040702996.2 → XP_040558930.1  RNA-binding protein 20 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Z7J6
      Conserved Domains (3) summary
      PTZ00121
      Location:704 → 1088
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1106 → 1140
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:469 → 559
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    12. XM_040702994.2 → XP_040558928.1  RNA-binding protein 20 isoform X10

      UniProtKB/TrEMBL
      A0A8V0Z5Z8
      Related
      ENSGALP00010026575.1, ENSGALT00010044633.1
      Conserved Domains (3) summary
      PTZ00121
      Location:710 → 1094
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1112 → 1146
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:474 → 564
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    13. XM_040702997.1 → XP_040558931.1  RNA-binding protein 20 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Z7J6
      Conserved Domains (3) summary
      PTZ00121
      Location:636 → 1020
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1038 → 1072
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:400 → 490
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      26716197..26810061
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040675019.2 → XP_040530953.1  RNA-binding protein 20 isoform X11

      UniProtKB/TrEMBL
      A0A8V0Z613
      Conserved Domains (3) summary
      PTZ00121
      Location:708 → 1092
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1110 → 1144
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:472 → 562
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    2. XM_040675020.2 → XP_040530954.1  RNA-binding protein 20 isoform X5

      UniProtKB/TrEMBL
      A0A8V0Z613
      Conserved Domains (3) summary
      PTZ00121
      Location:707 → 1091
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1109 → 1143
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:472 → 562
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    3. XM_040675015.2 → XP_040530949.1  RNA-binding protein 20 isoform X1

      UniProtKB/TrEMBL
      A0A8V0Z6L8
      Conserved Domains (3) summary
      PTZ00121
      Location:748 → 1132
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1150 → 1184
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:512 → 602
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    4. XM_040675016.2 → XP_040530950.1  RNA-binding protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A8V0Z6L8
      Conserved Domains (3) summary
      PTZ00121
      Location:747 → 1131
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1149 → 1183
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:512 → 602
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    5. XM_040675017.2 → XP_040530951.1  RNA-binding protein 20 isoform X3

      UniProtKB/TrEMBL
      A0A8V0Z6L8
      Conserved Domains (3) summary
      PTZ00121
      Location:746 → 1130
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1148 → 1182
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:510 → 600
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    6. XM_040675018.2 → XP_040530952.1  RNA-binding protein 20 isoform X4

      UniProtKB/TrEMBL
      A0A8V0Z6L8
      Conserved Domains (3) summary
      PTZ00121
      Location:745 → 1129
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1147 → 1181
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:510 → 600
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    7. XM_046920823.1 → XP_046776779.1  RNA-binding protein 20 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Z7J6

    8. XM_046920822.1 → XP_046776778.1  RNA-binding protein 20 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Z7J6

    9. XM_040675021.2 → XP_040530955.1  RNA-binding protein 20 isoform X6

      UniProtKB/TrEMBL
      A0A8V0Z7J6
      Conserved Domains (3) summary
      PTZ00121
      Location:705 → 1089
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1107 → 1141
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:469 → 559
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    10. XM_040675022.2 → XP_040530956.1  RNA-binding protein 20 isoform X7

      UniProtKB/TrEMBL
      A0A8V0Z7J6
      Conserved Domains (3) summary
      PTZ00121
      Location:704 → 1088
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1106 → 1140
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:469 → 559
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

    11. XM_040675023.2 → XP_040530957.1  RNA-binding protein 20 isoform X8

      UniProtKB/TrEMBL
      A0A8V0Z7J6
      Conserved Domains (3) summary
      PTZ00121
      Location:636 → 1020
      PTZ00121; MAEBL; Provisional
      smart00451
      Location:1038 → 1072
      ZnF_U1; U1-like zinc finger
      TIGR01649
      Location:400 → 490
      hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    Nucleotide Protein
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