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    ZRANB1 zinc finger RANBP2-type containing 1 [ Gallus gallus (chicken) ]

    Gene ID: 423953, updated on 17-Aug-2024

    Summary

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    Symbol
    ZRANB1provided by CGNC
    Full Name
    zinc finger RANBP2-type containing 1provided by CGNC
    Primary source
    CGNC:16332
    See related
    Ensembl:ENSGALG00010002401
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See ZRANB1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (32983457..33021154)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (32868520..32906227)

    Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 53 member B Neighboring gene methyltransferase like 10 Neighboring gene abraxas 2, BRISC complex subunit Neighboring gene C-terminal binding protein 2 Neighboring gene microRNA 1726 Neighboring gene microRNA 6560

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of Wnt signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K29-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K33-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination involved in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin thioesterase ZRANB1
    Names
    TRABID protein
    zinc finger, RAN-binding domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      32983457..33021154
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046943172.1 → XP_046799128.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A1D5PDU1

    2. XM_015289058.4 → XP_015144544.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A1D5PDU1
      Related
      ENSGALP00010003351.1, ENSGALT00010005512.1
      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain

    3. XM_015289060.4 → XP_015144546.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A1D5PDU1
      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      32868520..32906227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046920655.1 → XP_046776611.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A1D5PDU1

    2. XM_040674476.2 → XP_040530410.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A1D5PDU1
      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain

    3. XM_040674477.2 → XP_040530411.1  ubiquitin thioesterase ZRANB1

      UniProtKB/TrEMBL
      A0A1D5PDU1
      Conserved Domains (4) summary
      smart00547
      Location:152 → 175
      ZnF_RBZ; Zinc finger domain
      sd00029
      Location:88 → 107
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam02338
      Location:438 → 586
      OTU; OTU-like cysteine protease
      pfam18418
      Location:246 → 341
      AnkUBD; Ankyrin ubiquitin-binding domain
    Nucleotide Protein
    Heading Accession and Version

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