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    OTUD4 OTU deubiquitinase 4 [ Gallus gallus (chicken) ]

    Gene ID: 422463, updated on 17-Aug-2024

    Summary

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    Symbol
    OTUD4provided by CGNC
    Full Name
    OTU deubiquitinase 4provided by CGNC
    Primary source
    CGNC:51745
    See related
    Ensembl:ENSGALG00010006387
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See OTUD4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (30599884..30630284, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (30551825..30582218, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene anaphase promoting complex subunit 10 Neighboring gene hedgehog interacting protein Neighboring gene ATP binding cassette subfamily E member 1 Neighboring gene SMAD family member 1 Neighboring gene methylmalonic aciduria (cobalamin deficiency) cblA type

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of interleukin-1-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of toll-like receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein K48-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OTU domain-containing protein 4
    Names
    HIV-1 induced protein HIN-1
    OTU domain containing 4
    XP_015132203.2
    XP_025005687.2
    XP_040525953.1
    XP_040525955.1
    XP_040525957.1
    XP_040525958.1
    XP_040556216.1
    XP_040556217.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      30599884..30630284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040700282.2 → XP_040556216.1  OTU domain-containing protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XSL1
      Conserved Domains (4) summary
      smart00333
      Location:285 → 342
      TUDOR; Tudor domain
      PHA03247
      Location:337 → 664
      PHA03247; large tegument protein UL36; Provisional
      PRK12678
      Location:918 → 1100
      PRK12678; transcription termination factor Rho; Provisional
      pfam15822
      Location:537 → 653
      MISS; MAPK-interacting and spindle-stabilizing protein-like

    2. XM_015276717.4 → XP_015132203.2  OTU domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XSL1
      Related
      ENSGALP00010008960.1, ENSGALT00010015263.1
      Conserved Domains (3) summary
      PTZ00449
      Location:521 → 776
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00333
      Location:285 → 342
      TUDOR; Tudor domain
      PRK12678
      Location:921 → 1103
      PRK12678; transcription termination factor Rho; Provisional

    3. XM_025149919.3 → XP_025005687.2  OTU domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XL91, A0A8V0XSL1
      Related
      ENSGALP00010008958.1, ENSGALT00010015257.1
      Conserved Domains (3) summary
      PTZ00449
      Location:521 → 801
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00333
      Location:285 → 342
      TUDOR; Tudor domain
      PRK12678
      Location:946 → 1128
      PRK12678; transcription termination factor Rho; Provisional

    4. XM_040700283.2 → XP_040556217.1  OTU domain-containing protein 4 isoform X4

      Conserved Domains (1) summary
      smart00333
      Location:285 → 342
      TUDOR; Tudor domain

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      30551825..30582218 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670023.2 → XP_040525957.1  OTU domain-containing protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A8V0XSL1
      Conserved Domains (4) summary
      smart00333
      Location:285 → 342
      TUDOR; Tudor domain
      PHA03247
      Location:337 → 664
      PHA03247; large tegument protein UL36; Provisional
      PRK12678
      Location:918 → 1100
      PRK12678; transcription termination factor Rho; Provisional
      pfam15822
      Location:537 → 653
      MISS; MAPK-interacting and spindle-stabilizing protein-like

    2. XM_040670021.2 → XP_040525955.1  OTU domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A8V0XSL1
      Conserved Domains (3) summary
      PTZ00449
      Location:521 → 776
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00333
      Location:285 → 342
      TUDOR; Tudor domain
      PRK12678
      Location:921 → 1103
      PRK12678; transcription termination factor Rho; Provisional

    3. XM_040670019.2 → XP_040525953.1  OTU domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8V0XSL1
      Conserved Domains (3) summary
      PTZ00449
      Location:521 → 801
      PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional
      smart00333
      Location:285 → 342
      TUDOR; Tudor domain
      PRK12678
      Location:946 → 1128
      PRK12678; transcription termination factor Rho; Provisional

    4. XM_040670024.2 → XP_040525958.1  OTU domain-containing protein 4 isoform X4

      Conserved Domains (1) summary
      cl02573
      Location:285 → 342
      Tudor_SF; Tudor domain superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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