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    HOXC13 homeobox C13 [ Gallus gallus (chicken) ]

    Gene ID: 771955, updated on 17-Aug-2024

    Summary

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    Symbol
    HOXC13provided by CGNC
    Full Name
    homeobox C13provided by CGNC
    Primary source
    CGNC:66674
    See related
    Ensembl:ENSGALG00010025397
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See HOXC13 in Genome Data Viewer
    Location:
    chromosome: 34
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 34 NC_052565.1 (905542..909510, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 34 NC_052606.1 (850060..854038, complement)

    Chromosome 34 - NC_052565.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107055410 Neighboring gene homeobox C12 Neighboring gene ATP synthase, H+ transporting, mitochondrial Fo complex subunit C2 (subunit 9) Neighboring gene activating transcription factor 7 Neighboring gene microRNA 2130

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-C13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052565.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      905542..909510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001235165.5 → XP_001235166.4  homeobox protein Hox-C13

      UniProtKB/TrEMBL
      A0A1D5P370
      Related
      ENSGALP00010038297.1, ENSGALT00010062008.1
      Conserved Domains (2) summary
      pfam00046
      Location:228 → 277
      Homeobox; Homeobox domain
      pfam12284
      Location:34 → 131
      HoxA13_N; Hox protein A13 N terminal

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052606.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      850060..854038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040693972.1 → XP_040549906.1  homeobox protein Hox-C13

      UniProtKB/TrEMBL
      A0A1D5P370
      Conserved Domains (2) summary
      pfam00046
      Location:228 → 277
      Homeobox; Homeobox domain
      pfam12284
      Location:34 → 131
      HoxA13_N; Hox protein A13 N terminal
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials