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    PDE1C phosphodiesterase 1C [ Gallus gallus (chicken) ]

    Gene ID: 420752, updated on 3-Dec-2024

    Summary

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    Symbol
    PDE1Cprovided by CGNC
    Full Name
    phosphodiesterase 1Cprovided by CGNC
    Primary source
    CGNC:9284
    See related
    Ensembl:ENSGALG00010019585
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See PDE1C in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (48102828..48398406)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (48149103..48444607)

    Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene AVL9 cell migration associated Neighboring gene LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated Neighboring gene uncharacterized LOC121112047 Neighboring gene uncharacterized LOC121109547 Neighboring gene uncharacterized LOC112531728 Neighboring gene protein phosphatase 1 regulatory subunit 17 Neighboring gene coiled-coil domain containing 129

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 3',5'-cyclic-nucleotide phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C; LOW QUALITY PROTEIN: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C
    Names
    phosphodiesterase 1C, calmodulin-dependent 70kDa
    XP_040518597.1
    XP_040518598.1
    XP_040518599.1
    XP_040518601.1
    XP_040518602.1
    XP_040518603.1
    XP_040518605.1
    XP_040518606.1
    XP_040518607.1
    XP_040518608.1
    XP_040518610.1
    XP_040518611.1
    XP_040518612.1
    XP_046768496.1
    XP_046768497.1
    XP_046768498.1
    XP_046768499.1
    XP_046768500.1
    XP_046794095.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      48102828..48398406
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046938139.1 → XP_046794095.1  LOW QUALITY PROTEIN: calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZHM1
      Related
      ENSGALP00010028073.1, ENSGALT00010047378.1

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      48149103..48444607
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046912540.1 → XP_046768496.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X1

      UniProtKB/TrEMBL
      A0A8V0ZHM1

    2. XM_040662663.2 → XP_040518597.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X2

      UniProtKB/TrEMBL
      A0A8V0ZHM1
      Conserved Domains (1) summary
      cd00077
      Location:287 → 459
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    3. XM_040662672.2 → XP_040518606.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X6

      UniProtKB/TrEMBL
      A0A8V0ZHM1
      Conserved Domains (1) summary
      cd00077
      Location:287 → 459
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    4. XM_040662664.2 → XP_040518598.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAX0
      Conserved Domains (1) summary
      cd00077
      Location:248 → 420
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    5. XM_040662667.2 → XP_040518601.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZAW5
      Conserved Domains (1) summary
      cd00077
      Location:227 → 399
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    6. XM_040662677.2 → XP_040518611.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X12

      UniProtKB/TrEMBL
      A0A8V0ZAX0
      Conserved Domains (1) summary
      cd00077
      Location:227 → 399
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    7. XM_040662669.2 → XP_040518603.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZAW5, A0A8V0ZAX0
      Conserved Domains (1) summary
      cd00077
      Location:218 → 390
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    8. XM_040662665.2 → XP_040518599.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X3

      UniProtKB/TrEMBL
      A0A8V0ZAX0
      Conserved Domains (1) summary
      cd00077
      Location:248 → 420
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    9. XM_040662668.2 → XP_040518602.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X4

      UniProtKB/TrEMBL
      A0A8V0ZAW5
      Conserved Domains (1) summary
      cd00077
      Location:227 → 399
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    10. XM_046912541.1 → XP_046768497.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X8

      UniProtKB/TrEMBL
      A0A8V0ZAX0

    11. XM_040662671.2 → XP_040518605.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X5

      UniProtKB/TrEMBL
      A0A8V0ZAW5, A0A8V0ZAX0
      Conserved Domains (1) summary
      cd00077
      Location:218 → 390
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    12. XM_040662676.2 → XP_040518610.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X11

      UniProtKB/TrEMBL
      A0A8V0ZHK1
      Conserved Domains (1) summary
      cd00077
      Location:227 → 399
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    13. XM_046912544.1 → XP_046768500.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X11

      UniProtKB/TrEMBL
      A0A8V0ZHK1

    14. XM_046912542.1 → XP_046768498.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X10

      UniProtKB/TrEMBL
      A0A8V0ZAX0

    15. XM_046912543.1 → XP_046768499.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X11

      UniProtKB/TrEMBL
      A0A8V0ZHK1

    16. XM_040662673.2 → XP_040518607.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X7

      UniProtKB/TrEMBL
      A0A8V0ZAX0
      Conserved Domains (1) summary
      cd00077
      Location:212 → 384
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    17. XM_040662678.2 → XP_040518612.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X13

      UniProtKB/TrEMBL
      A0A8V0Z480
      Conserved Domains (1) summary
      cd00077
      Location:114 → 286
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif

    18. XM_040662674.2 → XP_040518608.1  calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C isoform X9

      UniProtKB/TrEMBL
      A0A8V0Z480
      Conserved Domains (1) summary
      cd00077
      Location:193 → 365
      HDc; Metal dependent phosphohydrolases with conserved 'HD' motif
    Nucleotide Protein
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