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    LINC02530 long intergenic non-protein coding RNA 2530 [ Homo sapiens (human) ]

    Gene ID: 101928309, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02530provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2530provided by HGNC
    Primary source
    HGNC:HGNC:53556
    See related
    Ensembl:ENSG00000234015 AllianceGenome:HGNC:53556
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02530 in Genome Data Viewer
    Location:
    6p24.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (12582768..12585404, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (12451175..12453813, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (12583000..12585636, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374931 Neighboring gene RN7SK pseudogene 293 Neighboring gene Sharpr-MPRA regulatory region 4078 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:12483687-12484886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:12494607-12495106 Neighboring gene ribosomal protein L15 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 7011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24019 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16923 Neighboring gene NANOG hESC enhancer GRCh37_chr6:12672164-12672665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:12673381-12673882 Neighboring gene uncharacterized LOC107984015 Neighboring gene uncharacterized LOC124901503 Neighboring gene uncharacterized LOC105374935 Neighboring gene phosphatase and actin regulator 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_149140.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL591068, BC042564
      Related
      ENST00000457945.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      12582768..12585404 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      12451175..12453813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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