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    LINC02796 long intergenic non-protein coding RNA 2796 [ Homo sapiens (human) ]

    Gene ID: 339468, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC02796provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2796provided by HGNC
    Primary source
    HGNC:HGNC:27918
    See related
    AllianceGenome:HGNC:27918
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC02797
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02796 in Genome Data Viewer
    Location:
    1p31.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (72764888..72784098)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (72598434..72617648)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (73230571..73249781)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378797 Neighboring gene uncharacterized LOC105378796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:73113838-73114818 Neighboring gene uncharacterized LOC105378798 Neighboring gene RNA, U6 small nuclear 1246, pseudogene Neighboring gene long intergenic non-protein coding RNA 2797 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:73364724-73365332 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73445932-73446458 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73446459-73446984 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:73449654-73450520 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73452190-73452910 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73452911-73453630 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:73453631-73454350 Neighboring gene keratin 8 pseudogene 21

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187240.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139149, AL583808

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      72764888..72784098
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      72598434..72617648
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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