U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LINC01656 long intergenic non-protein coding RNA 1656 [ Homo sapiens (human) ]

    Gene ID: 101927526, updated on 10-Dec-2024

    Summary

    Official Symbol
    LINC01656provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1656provided by HGNC
    Primary source
    HGNC:HGNC:52444
    See related
    Ensembl:ENSG00000232655 AllianceGenome:HGNC:52444
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC01656 in Genome Data Viewer
    Location:
    22q13.31
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (44443327..44444788)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (44927164..44928626)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (44839207..44840668)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene shisa like 1 Neighboring gene uncharacterized LOC101927499 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44712691-44713192 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44713193-44713692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44733447-44734210 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44734211-44734974 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:44748529-44749458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44765925-44766426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44787184-44788062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44788063-44788941 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:44791267-44791872 Neighboring gene S-phase kinase associated protein 1 pseudogene 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44839807-44840536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44840537-44841266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44843884-44844547 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr22:44844727-44845926 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19211 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44891229-44892006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:44892007-44892784 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13867 Neighboring gene MRPS18C pseudogene 6 Neighboring gene retrotransposon Gag like 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109966.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC035864, Z81308
      Related
      ENST00000415702.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      44443327..44444788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      44927164..44928626
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)