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    SNR31 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 9164979, updated on 9-Dec-2024

    Summary

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    Official Symbol
    SNR31
    Primary source
    SGD:S000007296
    Locus tag
    YNCO0027C
    See related
    AllianceGenome:SGD:S000007296
    Gene type
    ncRNA
    RNA name
    snoRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Enables rRNA pseudouridylation guide activity. Involved in rRNA pseudouridine synthesis. Part of box H/ACA snoRNP complex. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See SNR31 in Genome Data Viewer
    Location:
    chromosome: XV
    Exon count:
    1
    Sequence:
    Chromosome: XV; NC_001147.6 (841958..842182, complement)

    Chromosome XV - NC_001147.6Genomic Context describing neighboring genes Neighboring gene Rim20p Neighboring gene Caf20p Neighboring gene ncRNA Neighboring gene uroporphyrinogen-III synthase HEM4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001147.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and functional analysis of a novel yeast small nucleolar RNA. Dandekar T, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265353, Free PMC Article
    2. SnR31, snR32, and snR33: three novel, non-essential snRNAs from Saccharomyces cerevisiae. Balakin AG, et al. Nucleic Acids Res, 1993 Nov 25. PMID 8265354, Free PMC Article
    3. The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Lafontaine DL, et al. Genes Dev, 1998 Feb 15. PMID 9472021, Free PMC Article
    4. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Ni J, et al. Cell, 1997 May 16. PMID 9160748
    5. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. Torchet C, et al. RNA, 2005 Jun. PMID 15923376, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • H/ACA box small nucleolar RNA (snoRNA); guides pseudouridylation of small subunit (SSU) rRNA at position U999

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables rRNA pseudouridylation guide activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA pseudouridine synthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in nucleolus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001147.6 Reference assembly

      Range
      841958..842182 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_132264.1 RNA Sequence

      Status: REVIEWED

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