U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Pabir3 PABIR family member 3 [ Mus musculus (house mouse) ]

    Gene ID: 73866, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Pabir3provided by MGI
    Official Full Name
    PABIR family member 3provided by MGI
    Primary source
    MGI:MGI:1921116
    See related
    Ensembl:ENSMUSG00000036013 AllianceGenome:MGI:1921116
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam122c; 4930432H15Rik; 4930527G05Rik
    Summary
    Orthologous to human PABIR3 (PABIR family member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 12.2) See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Pabir3 in Genome Data Viewer
    Location:
    X A5; X 29.45 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (52362296..52420063)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (53273419..53331186)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 35988 Neighboring gene placental specific protein 1 Neighboring gene PABIR family member 2 Neighboring gene ribosomal protein L13 pseudogene Neighboring gene motile sperm domain containing 1 Neighboring gene casein kinase 1, gamma 3 pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Mouse screen reveals multiple new genes underlying mouse and human hearing loss. Ingham NJ, et al. PLoS Biol, 2019 Apr. PMID 30973865, Free PMC Article
    2. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein FAM122C
    Names
    family with sequence similarity 122, member C

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028671.3 → NP_082947.1  protein FAM122C

      See identical proteins and their annotated locations for NP_082947.1

      Status: VALIDATED

      Source sequence(s)
      AK015288, AK015916
      Consensus CDS
      CCDS40973.1
      UniProtKB/TrEMBL
      Q9D514, Q9D5J5
      Related
      ENSMUSP00000110484.2, ENSMUST00000114835.8

    RNA

    1. NR_153099.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC147640, BX679674

    2. NR_153100.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK015288, BX679674

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      52362296..52420063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006541549.5 → XP_006541612.1  protein FAM122C isoform X1

      See identical proteins and their annotated locations for XP_006541612.1

      UniProtKB/TrEMBL
      Q9D514, Q9D5J5

    2. XM_006541548.1 → XP_006541611.1  protein FAM122C isoform X1

      See identical proteins and their annotated locations for XP_006541611.1

      UniProtKB/TrEMBL
      Q9D514, Q9D5J5
      Related
      ENSMUSP00000127499.2, ENSMUST00000124137.8
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools