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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_042894.1 RefSeqGene
- Range
-
5001..70083
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_1026
mRNA and Protein(s)
-
NM_001305544.2 → NP_001292473.1 E3 ubiquitin-protein ligase RNF43 isoform 1 precursor
See identical proteins and their annotated locations for NP_001292473.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in its 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AB081837, AC004687, AK000322, BC109028, CR627423
- Consensus CDS
-
CCDS11607.1
- UniProtKB/Swiss-Prot
- A8K4R2, B7Z443, B7Z5D5, B7Z5J5, Q65ZA4, Q68DV7, Q6AI04, Q9NXD0
- UniProtKB/TrEMBL
-
A0A3B3ITA1
- Related
- ENSP00000462764.1, ENST00000577716.5
- Conserved Domains (4) summary
-
- cd16798
Location:270 → 316
- RING-H2_RNF43; RING finger, H2 subclass, found in RING finger protein 43 (RNF43) and similar proteins
- cl26464
Location:570 → 747
- Atrophin-1; Atrophin-1 family
- cl28033
Location:312 → 669
- Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
- cl28883
Location:87 → 186
- PA; PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. ...
-
NM_001305545.1 → NP_001292474.1 E3 ubiquitin-protein ligase RNF43 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has multiple differences, compared to variant 1. These differences result in a distinct 5' UTR and cause translation initiation at a downstream start codon, compared to variant 1. The encoded protein (isoform 2) has a shorter N-terminus, compared to isoform 1.
- Source sequence(s)
-
AB081837, AC004687, AK000322, AK299024, BC109028
- Consensus CDS
-
CCDS82172.1
- UniProtKB/TrEMBL
-
A0A3B3ITA1
- Related
- ENSP00000463716.1, ENST00000577625.5
- Conserved Domains (1) summary
-
- pfam13639
Location:143 → 185
- zf-RING_2; Ring finger domain
-
NM_017763.6 → NP_060233.3 E3 ubiquitin-protein ligase RNF43 isoform 1 precursor
See identical proteins and their annotated locations for NP_060233.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1). Both variants 1 and 2 encode the same protein.
- Source sequence(s)
-
AK000322, AK291027, BC109028, CR627423
- Consensus CDS
-
CCDS11607.1
- UniProtKB/Swiss-Prot
- A8K4R2, B7Z443, B7Z5D5, B7Z5J5, Q65ZA4, Q68DV7, Q6AI04, Q9NXD0
- UniProtKB/TrEMBL
-
A0A3B3ITA1
- Related
- ENSP00000385328.2, ENST00000407977.7
- Conserved Domains (4) summary
-
- cd16798
Location:270 → 316
- RING-H2_RNF43; RING finger, H2 subclass, found in RING finger protein 43 (RNF43) and similar proteins
- cl26464
Location:570 → 747
- Atrophin-1; Atrophin-1 family
- cl28033
Location:312 → 669
- Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
- cl28883
Location:87 → 186
- PA; PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000017.11 Reference GRCh38.p14 Primary Assembly
- Range
-
58352500..58417534 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047436332.1 → XP_047292288.1 E3 ubiquitin-protein ligase RNF43 isoform X2
- UniProtKB/Swiss-Prot
- A8K4R2, B7Z443, B7Z5D5, B7Z5J5, Q65ZA4, Q68DV7, Q6AI04, Q9NXD0
- UniProtKB/TrEMBL
-
A0A3B3ITA1
-
XM_047436331.1 → XP_047292287.1 E3 ubiquitin-protein ligase RNF43 isoform X2
- UniProtKB/Swiss-Prot
- A8K4R2, B7Z443, B7Z5D5, B7Z5J5, Q65ZA4, Q68DV7, Q6AI04, Q9NXD0
- UniProtKB/TrEMBL
-
A0A3B3ITA1
- Related
- ENSP00000463069.1, ENST00000584437.5
-
XM_017024800.3 → XP_016880289.1 E3 ubiquitin-protein ligase RNF43 isoform X1
- UniProtKB/TrEMBL
-
A0A3B3ITA1
- Conserved Domains (2) summary
-
- pfam13639
Location:270 → 312
- zf-RING_2; Ring finger domain
- cl10459
Location:87 → 186
- Peptidases_S8_S53; Peptidase domain in the S8 and S53 families
-
XM_047436330.1 → XP_047292286.1 E3 ubiquitin-protein ligase RNF43 isoform X1
- UniProtKB/TrEMBL
-
A0A3B3ITA1
-
XM_011524956.4 → XP_011523258.1 E3 ubiquitin-protein ligase RNF43 isoform X3
- UniProtKB/TrEMBL
- A0A3B3ITA1, J3KSE3
- Related
- ENSP00000462447.1, ENST00000581868.1
- Conserved Domains (1) summary
-
- pfam13639
Location:143 → 185
- zf-RING_2; Ring finger domain
Alternate T2T-CHM13v2.0
Genomic
-
NC_060941.1 Alternate T2T-CHM13v2.0
- Range
-
59220375..59286465 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054316574.1 → XP_054172549.1 E3 ubiquitin-protein ligase RNF43 isoform X2
- UniProtKB/TrEMBL
-
A0A3B3ITA1
-
XM_054316576.1 → XP_054172551.1 E3 ubiquitin-protein ligase RNF43 isoform X5
- UniProtKB/TrEMBL
-
A0A3B3ITA1
-
XM_054316572.1 → XP_054172547.1 E3 ubiquitin-protein ligase RNF43 isoform X1
- UniProtKB/TrEMBL
-
A0A3B3ITA1
-
XM_054316575.1 → XP_054172550.1 E3 ubiquitin-protein ligase RNF43 isoform X3
- UniProtKB/TrEMBL
-
A0A3B3ITA1
-
XM_054316573.1 → XP_054172548.1 E3 ubiquitin-protein ligase RNF43 isoform X4
- UniProtKB/TrEMBL
-
A0A3B3ITA1