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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001286514.2 → NP_001273443.1 activating transcription factor 7-interacting protein 1 isoform 3
See identical proteins and their annotated locations for NP_001273443.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and contains multiple differences in the 5' coding region, compared to variant 1. It initiates translation at a downstream in-frame start codon. The encoded isoform (3) is shorter than isoform 1.
- Source sequence(s)
-
AC008114, BC053625, BX648096, DA194386
- Consensus CDS
-
CCDS66327.1
- UniProtKB/Swiss-Prot
-
Q6VMQ6
- Related
- ENSP00000445955.1, ENST00000536444.5
- Conserved Domains (5) summary
-
- PTZ00341
Location:319 → 549
- PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
- PHA03247
Location:819 → 1173
- PHA03247; large tegument protein UL36; Provisional
- pfam16788
Location:563 → 774
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1159 → 1259
- fn3_4; Fibronectin-III type domain
- NF033845
Location:104 → 370
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_001286515.2 → NP_001273444.1 activating transcription factor 7-interacting protein 1 isoform 4
See identical proteins and their annotated locations for NP_001273444.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in both the 5' and 3' UTRs and contains multiple differences in the coding region, compared to variant 1. It initiates translation at a downstream in-frame start codon. The encoded isoform (4) has a distinct C-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC007782, AC008114, BC063855, DA194386
- Consensus CDS
-
CCDS73449.1
- UniProtKB/Swiss-Prot
-
Q6VMQ6
- Related
- ENSP00000443179.1, ENST00000543189.5
- Conserved Domains (2) summary
-
- PHA02664
Location:126 → 282
- PHA02664; hypothetical protein; Provisional
- pfam16788
Location:563 → 774
- ATF7IP_BD; ATF-interacting protein binding domain
-
NM_001388179.1 → NP_001375108.1 activating transcription factor 7-interacting protein 1 isoform 5
Status: VALIDATED
- Source sequence(s)
-
AC007782, AC008114, AC124892
- Conserved Domains (5) summary
-
- PTZ00341
Location:327 → 557
- PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
- PHA03247
Location:674 → 1165
- PHA03247; large tegument protein UL36; Provisional
- pfam16788
Location:571 → 782
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1167 → 1267
- fn3_4; Fibronectin-III type domain
- NF033845
Location:112 → 378
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_001388180.1 → NP_001375109.1 activating transcription factor 7-interacting protein 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC007782, AC008114, AC124892
- Consensus CDS
-
CCDS8663.1
- UniProtKB/Swiss-Prot
- F5GX74, G3V1U0, Q4G0T9, Q6P3T3, Q6VMQ6, Q86XW5, Q9NVJ9, Q9NWC2, Q9Y4X8
- Conserved Domains (5) summary
-
- PTZ00341
Location:319 → 574
- PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
- PHA03247
Location:822 → 1158
- PHA03247; large tegument protein UL36; Provisional
- pfam16788
Location:564 → 775
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1160 → 1260
- fn3_4; Fibronectin-III type domain
- NF033845
Location:104 → 370
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_001388181.1 → NP_001375110.1 activating transcription factor 7-interacting protein 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC007782, AC008114, AC124892
- Consensus CDS
-
CCDS8663.1
- UniProtKB/Swiss-Prot
- F5GX74, G3V1U0, Q4G0T9, Q6P3T3, Q6VMQ6, Q86XW5, Q9NVJ9, Q9NWC2, Q9Y4X8
- Related
- ENSP00000444589.1, ENST00000540793.5
- Conserved Domains (5) summary
-
- PTZ00341
Location:319 → 574
- PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
- PHA03247
Location:822 → 1158
- PHA03247; large tegument protein UL36; Provisional
- pfam16788
Location:564 → 775
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1160 → 1260
- fn3_4; Fibronectin-III type domain
- NF033845
Location:104 → 370
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_001388182.1 → NP_001375111.1 activating transcription factor 7-interacting protein 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC007782, AC008114, AC124892
- Consensus CDS
-
CCDS8663.1
- UniProtKB/Swiss-Prot
- F5GX74, G3V1U0, Q4G0T9, Q6P3T3, Q6VMQ6, Q86XW5, Q9NVJ9, Q9NWC2, Q9Y4X8
- Conserved Domains (5) summary
-
- PTZ00341
Location:319 → 574
- PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
- PHA03247
Location:822 → 1158
- PHA03247; large tegument protein UL36; Provisional
- pfam16788
Location:564 → 775
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1160 → 1260
- fn3_4; Fibronectin-III type domain
- NF033845
Location:104 → 370
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_001388183.1 → NP_001375112.1 activating transcription factor 7-interacting protein 1 isoform 2
Status: VALIDATED
- Source sequence(s)
-
AC007782, AC008114, AC124892
- Consensus CDS
-
CCDS8663.1
- UniProtKB/Swiss-Prot
- F5GX74, G3V1U0, Q4G0T9, Q6P3T3, Q6VMQ6, Q86XW5, Q9NVJ9, Q9NWC2, Q9Y4X8
- Conserved Domains (5) summary
-
- PTZ00341
Location:319 → 574
- PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
- PHA03247
Location:822 → 1158
- PHA03247; large tegument protein UL36; Provisional
- pfam16788
Location:564 → 775
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1160 → 1260
- fn3_4; Fibronectin-III type domain
- NF033845
Location:104 → 370
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_001388184.1 → NP_001375113.1 activating transcription factor 7-interacting protein 1 isoform 3
Status: VALIDATED
- Source sequence(s)
-
AC007782, AC008114, AC124892
- Consensus CDS
-
CCDS66327.1
- Conserved Domains (5) summary
-
- PTZ00341
Location:319 → 549
- PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
- PHA03247
Location:819 → 1173
- PHA03247; large tegument protein UL36; Provisional
- pfam16788
Location:563 → 774
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1159 → 1259
- fn3_4; Fibronectin-III type domain
- NF033845
Location:104 → 370
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_018179.5 → NP_060649.3 activating transcription factor 7-interacting protein 1 isoform 2
See identical proteins and their annotated locations for NP_060649.3
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
- Source sequence(s)
-
AC008114, AK025060, AK027575, AK074868, BX648096
- Consensus CDS
-
CCDS8663.1
- UniProtKB/Swiss-Prot
- F5GX74, G3V1U0, Q4G0T9, Q6P3T3, Q6VMQ6, Q86XW5, Q9NVJ9, Q9NWC2, Q9Y4X8
- Related
- ENSP00000261168.4, ENST00000261168.9
- Conserved Domains (5) summary
-
- PTZ00341
Location:319 → 574
- PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
- PHA03247
Location:822 → 1158
- PHA03247; large tegument protein UL36; Provisional
- pfam16788
Location:564 → 775
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1160 → 1260
- fn3_4; Fibronectin-III type domain
- NF033845
Location:104 → 370
- MSCRAMM_ClfB; MSCRAMM family adhesin clumping factor ClfB
-
NM_181352.2 → NP_851997.1 activating transcription factor 7-interacting protein 1 isoform 1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
- Source sequence(s)
-
AC008114, AF425650, AY337596, BX648096, DC377662
- Consensus CDS
-
CCDS66326.1
- UniProtKB/Swiss-Prot
-
Q6VMQ6
- Related
- ENSP00000440440.1, ENST00000544627.5
- Conserved Domains (3) summary
-
- PHA02664
Location:134 → 290
- PHA02664; hypothetical protein; Provisional
- pfam16788
Location:572 → 783
- ATF7IP_BD; ATF-interacting protein binding domain
- pfam16794
Location:1168 → 1268
- fn3_4; Fibronectin-III type domain
RNA
-
NR_170893.1 RNA Sequence
Status: VALIDATED
- Source sequence(s)
-
AC007782, AC008114, AC124892
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
14365682..14502930
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011520756.4 → XP_011519058.1 activating transcription factor 7-interacting protein 1 isoform X2
- Conserved Domains (2) summary
-
- PHA02664
Location:134 → 290
- PHA02664; hypothetical protein; Provisional
- pfam16788
Location:572 → 783
- ATF7IP_BD; ATF-interacting protein binding domain
-
XM_047429149.1 → XP_047285105.1 activating transcription factor 7-interacting protein 1 isoform X3
- UniProtKB/TrEMBL
-
B4E2A2
- Related
-
ENST00000541654.1
-
XM_047429150.1 → XP_047285106.1 activating transcription factor 7-interacting protein 1 isoform X4
- UniProtKB/TrEMBL
-
B4E2A2
-
XM_047429148.1 → XP_047285104.1 activating transcription factor 7-interacting protein 1 isoform X1
- UniProtKB/Swiss-Prot
- F5GX74, G3V1U0, Q4G0T9, Q6P3T3, Q6VMQ6, Q86XW5, Q9NVJ9, Q9NWC2, Q9Y4X8
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
14243190..14380441
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054372551.1 → XP_054228526.1 activating transcription factor 7-interacting protein 1 isoform X2
-
XM_054372552.1 → XP_054228527.1 activating transcription factor 7-interacting protein 1 isoform X3
- UniProtKB/TrEMBL
-
B4E2A2
-
XM_054372553.1 → XP_054228528.1 activating transcription factor 7-interacting protein 1 isoform X4
- UniProtKB/TrEMBL
-
B4E2A2