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    Gvin3 GTPase, very large interferon inducible, family member 3 [ Mus musculus (house mouse) ]

    Gene ID: 434223, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Gvin3provided by MGI
    Official Full Name
    GTPase, very large interferon inducible, family member 3provided by MGI
    Primary source
    MGI:MGI:3584360
    See related
    AllianceGenome:MGI:3584360
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1966
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gvin3 in Genome Data Viewer
    Location:
    7 E3; 7 56.01 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (106194756..106243853, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (106595549..106644646, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 8995 Neighboring gene STARR-positive B cell enhancer ABC_E6582 Neighboring gene STARR-positive B cell enhancer ABC_E6583 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113694817-113695117 Neighboring gene STARR-seq mESC enhancer starr_19751 Neighboring gene predicted gene, 39065 Neighboring gene STARR-positive B cell enhancer mm9_chr7:113787240-113787541 Neighboring gene STARR-seq mESC enhancer starr_19753 Neighboring gene olfactory receptor family 2 subfamily AG member 12 Neighboring gene olfactory receptor family 2 subfamily AG member 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The genetic program of hematopoietic stem cells. Phillips RL, et al. Science, 2000 Jun 2. PMID 10834841
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Interferon-induced very large GTPase 3; interferon-induced very large GTPase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277179.1 → NP_001264108.1  Interferon-induced very large GTPase 3

      See identical proteins and their annotated locations for NP_001264108.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shortest transcript. Variants 1-5 encode the same protein.
      Source sequence(s)
      AC135236, AC147246, AK171325, BU695302
      UniProtKB/TrEMBL
      Q3TBC0
      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_001277180.1 → NP_001264109.1  Interferon-induced very large GTPase 3

      See identical proteins and their annotated locations for NP_001264109.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein.
      Source sequence(s)
      AC135236, AC147246, AK171325, BU695302
      UniProtKB/TrEMBL
      Q3TBC0
      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. NM_001277181.1 → NP_001264110.1  Interferon-induced very large GTPase 3

      See identical proteins and their annotated locations for NP_001264110.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein.
      Source sequence(s)
      AC135236, AC147246, AC147554, AK171325, BU695302
      UniProtKB/TrEMBL
      Q3TBC0
      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    4. NM_001277182.1 → NP_001264111.1  Interferon-induced very large GTPase 3

      See identical proteins and their annotated locations for NP_001264111.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein.
      Source sequence(s)
      AC135236, AC147246, AC147554, AK171325, BU695302
      UniProtKB/TrEMBL
      Q3TBC0
      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    5. NM_001277183.1 → NP_001264112.1  Interferon-induced very large GTPase 3

      See identical proteins and their annotated locations for NP_001264112.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein.
      Source sequence(s)
      AC135236, AC147246, AC147554, AK171325, BU695302
      UniProtKB/TrEMBL
      Q3TBC0
      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      106194756..106243853 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241840.1 → XP_011240142.1  interferon-induced very large GTPase 3 isoform X1

      See identical proteins and their annotated locations for XP_011240142.1

      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_017322335.1 → XP_017177824.1  interferon-induced very large GTPase 3 isoform X1

      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_011241842.1 → XP_011240144.1  interferon-induced very large GTPase 3 isoform X1

      See identical proteins and their annotated locations for XP_011240144.1

      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    4. XM_011241841.1 → XP_011240143.1  interferon-induced very large GTPase 3 isoform X1

      See identical proteins and their annotated locations for XP_011240143.1

      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    5. XM_036153219.1 → XP_036009112.1  interferon-induced very large GTPase 3 isoform X1

      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    6. XM_011241839.1 → XP_011240141.1  interferon-induced very large GTPase 3 isoform X1

      See identical proteins and their annotated locations for XP_011240141.1

      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    7. XM_036153218.1 → XP_036009111.1  interferon-induced very large GTPase 3 isoform X1

      Conserved Domains (1) summary
      cl38936
      Location:1487 → 1565
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version

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