U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Or5d39 olfactory receptor family 5 subfamily D member 39 [ Mus musculus (house mouse) ]

    Gene ID: 258291, updated on 27-Nov-2024

    Summary

    Official Symbol
    Or5d39provided by MGI
    Official Full Name
    olfactory receptor family 5 subfamily D member 39provided by MGI
    Primary source
    MGI:MGI:3031001
    See related
    Ensembl:ENSMUSG00000100899 AllianceGenome:MGI:3031001
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Olfr1167; MOR174-16
    Summary
    Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Or5d39 in Genome Data Viewer
    Location:
    2 D; 2 49.98 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (87979328..87980427, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (88148984..88150083, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 5 subfamily D member 20, pseudogene 1 Neighboring gene olfactory receptor family 5 subfamily D member 38 Neighboring gene STARR-seq mESC enhancer starr_05061 Neighboring gene olfactory receptor family 5 subfamily D member 40 Neighboring gene olfactory receptor 1169, pseudogene 1

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables odorant binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables olfactory receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables olfactory receptor activity ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within G protein-coupled receptor signaling pathway ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    involved_in sensory perception of smell IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within sensory perception of smell ISA
    Inferred from Sequence Alignment
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in membrane ISA
    Inferred from Sequence Alignment
    more info
    PubMed 

    General protein information

    Preferred Names
    olfactory receptor 1167
    Names
    GA_x6K02T2Q125-49641892-49640942
    olfactory receptor MOR174-16

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_146294.2NP_666406.2  olfactory receptor 1167

      See identical proteins and their annotated locations for NP_666406.2

      Status: VALIDATED

      Source sequence(s)
      AL935055
      Consensus CDS
      CCDS16327.1
      UniProtKB/TrEMBL
      Q7TR26, Q8VEU9
      Related
      ENSMUSP00000097420.3, ENSMUST00000099832.5
      Conserved Domains (2) summary
      pfam00001
      Location:43292
      7tm_1; 7 transmembrane receptor (rhodopsin family)
      cl21561
      Location:33310
      7tm_4; Olfactory receptor

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      87979328..87980427 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)