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    UPSTREAM OF FLC protein (DUF966) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817361, updated on 18-Sep-2024

    Summary

    Official Full Name
    UPSTREAM OF FLC protein (DUF966)
    Primary source
    TAIR:AT2G28150
    Locus tag
    AT2G28150
    See related
    Araport:AT2G28150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F24D13.6; F24D13_6
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    Genomic context

    Location:
    chromosome: 2
    Exon count:
    6
    Sequence:
    Chromosome: 2; NC_003071.7 (11999736..12002738)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene actin protein 2/3 complex subunit-like protein Neighboring gene enabled-like protein (DUF1635) Neighboring gene FER-like regulator of iron uptake Neighboring gene Cation/hydrogen exchanger family protein Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_001336145.1
    NM_001336146.1
    NM_128375.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    located_in basal plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    UPSTREAM OF FLC protein (DUF966)
    NP_180382.2
    • FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF966 (InterPro:IPR010369), Uncharacterised conserved protein UCP031043 (InterPro:IPR021182); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF966) (TAIR:AT5G59790.1); Has 2510 Blast hits to 686 proteins in 184 species: Archae - 0; Bacteria - 433; Metazoa - 315; Fungi - 216; Plants - 186; Viruses - 4; Other Eukaryotes - 1356 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11999736..12002738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128375.4NP_180382.2  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180382.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYT8, Q9ZUV7
      UniProtKB/TrEMBL
      A0A178VQL1, A0A5S9X236, A0A7G2E9L3
      Conserved Domains (1) summary
      pfam06136
      Location:34434
      DUF966; Domain of unknown function (DUF966)
    2. NM_001336145.1NP_001324990.1  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQL1, A0A1P8B1S9
    3. NM_001336146.1NP_001324989.1  UPSTREAM OF FLC protein (DUF966) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B1T2
      Conserved Domains (1) summary
      pfam06136
      Location:40294
      DUF966; Domain of unknown function (DUF966)