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    uncharacterized protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 854816, updated on 9-Dec-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    SGD:S000001263
    Locus tag
    YIL001W
    See related
    AllianceGenome:SGD:S000001263; FungiDB:YIL001W; VEuPathDB:YIL001W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Located in cytoplasm. Orthologous to human ABTB1 (ankyrin repeat and BTB domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    Location:
    chromosome: IX
    Exon count:
    1
    Sequence:
    Chromosome: IX; NC_001141.2 (353940..355481)

    Chromosome IX - NC_001141.2Genomic Context describing neighboring genes Neighboring gene Cmi7p Neighboring gene phosphoinositide 5-phosphatase INP51 Neighboring gene Sgn1p Neighboring gene 3'-5' DNA helicase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001141.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Loss of dispensable genes is not adaptive in yeast. Sliwa P, et al. Proc Natl Acad Sci U S A, 2005 Dec 6. PMID 16314574, Free PMC Article
    2. Born to bind: the BTB protein-protein interaction domain. Perez-Torrado R, et al. Bioessays, 2006 Dec. PMID 17120193
    3. Dom34 Links Translation to Protein O-mannosylation. van Wijlick L, et al. PLoS Genet, 2016 Oct. PMID 27768707, Free PMC Article
    4. The nuclear basket proteins Mlp1p and Mlp2p are part of a dynamic interactome including Esc1p and the proteasome. Niepel M, et al. Mol Biol Cell, 2013 Dec. PMID 24152732, Free PMC Article
    5. The nucleotide sequence of Saccharomyces cerevisiae chromosome IX. Churcher C, et al. Nature, 1997 May 29. PMID 9169870

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_012265.3
    • hypothetical protein; contains a BTB/POZ domain which generally function in protein interactions; deletion slightly improved competitive fitness in rich media; GFP-tagged protein is localized to the cytoplasm

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001141.2 Reference assembly

      Range
      353940..355481
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179351.3 → NP_012265.3  TPA: uncharacterized protein YIL001W [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012265.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VVT0, P40560
      UniProtKB/TrEMBL
      A6ZVR8, B3LTK9, C7GJH2, C8ZAP9, G2WGE6, N1P1R3
      Conserved Domains (5) summary
      sd00045
      Location:41 → 66
      ANK; ANK repeat [structural motif]
      cd18186
      Location:123 → 202
      BTB_POZ_ZBTB_KLHL-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in zinc finger and BTB domain-containing (ZBTB) proteins, Kelch-like (KLHL) proteins, and similar proteins
      cd18296
      Location:261 → 391
      BTB2_POZ_ABTB1_BPOZ1; second BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
      cd18497
      Location:393 → 464
      BACK_ABTB1_BPOZ; BACK (BTB and C-terminal Kelch) domain found in ankyrin repeat and BTB/POZ domain-containing protein 1 (ABTB1)
      pfam13637
      Location:13 → 62
      Ank_4; Ankyrin repeats (many copies)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P40560.1

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