U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Mycbpap MYCBP associated protein [ Mus musculus (house mouse) ]

    Gene ID: 104601, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mycbpapprovided by MGI
    Official Full Name
    MYCBP associated proteinprovided by MGI
    Primary source
    MGI:MGI:2388726
    See related
    Ensembl:ENSMUSG00000039110 AllianceGenome:MGI:2388726
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AMAM-1; AMAP-1; 4932408B01Rik
    Summary
    Predicted to enable clathrin binding activity and phospholipid binding activity. Predicted to be involved in chemical synaptic transmission; endocytosis; and spermatogenesis. Predicted to be located in cytoplasm. Predicted to be part of clathrin vesicle coat. Predicted to be active in endosome and plasma membrane. Is expressed in 4th ventricle lateral recess; choroid plexus; lateral ventricle choroid plexus; and pancreas epithelium. Orthologous to human MYCBPAP (MYCBP associated protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in testis adult (RPKM 46.8) and lung adult (RPKM 2.1) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Mycbpap in Genome Data Viewer
    Location:
    11 D; 11 58.9 cM
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (94392173..94423219, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (94501347..94532386, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene spermatogenesis associated 20 Neighboring gene epsin 3 Neighboring gene predicted gene, 51873 Neighboring gene predicted gene, 35650 Neighboring gene radical S-adenosyl methionine domain containing 1 Neighboring gene acyl-CoA synthetase family member 2 Neighboring gene chondroadherin

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    General gene information

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in biological_process  
    involved_in cell differentiation  
    involved_in chemical synaptic transmission  
    involved_in spermatogenesis  
    Component Evidence Code Pubs
    located_in cytoplasm  
    located_in cytoplasm  
    located_in membrane  
    located_in synapse  

    General protein information

    Preferred Names
    MYCBP-associated protein
    Names
    AMY-1-binding protein 1
    AMY1-associating protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001415760.1NP_001402689.1  MYCBP-associated protein isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL645809
      UniProtKB/Swiss-Prot
      Q5SUV2, Q80YS8, Q8R2Q9
      UniProtKB/TrEMBL
      A0A668KL73
      Related
      ENSMUSP00000159222.2, ENSMUST00000239238.2
    2. NM_170671.3NP_733771.3  MYCBP-associated protein isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL645809
      Consensus CDS
      CCDS48887.1
      UniProtKB/Swiss-Prot
      Q5SUV2, Q80YS8, Q8R2Q9
      Related
      ENSMUSP00000091477.4, ENSMUST00000093945.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      94392173..94423219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006531938.5XP_006532001.1  MYCBP-associated protein isoform X1

      UniProtKB/Swiss-Prot
      Q5SUV2, Q80YS8, Q8R2Q9
      Conserved Domains (1) summary
      pfam14646
      Location:241658
      MYCBPAP; MYCBP-associated protein family
    2. XM_006531939.4XP_006532002.1  MYCBP-associated protein isoform X2

      UniProtKB/Swiss-Prot
      Q5SUV2, Q80YS8, Q8R2Q9
      Conserved Domains (1) summary
      pfam14646
      Location:241658
      MYCBPAP; MYCBP-associated protein family

    RNA

    1. XR_388315.4 RNA Sequence

    2. XR_003949210.2 RNA Sequence

      Related
      ENSMUST00000123496.8
    External link. Please review our privacy policy.