U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ASHH1 SET domain group 26 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844005, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ASHH1
    Official Full Name
    SET domain group 26
    Primary source
    TAIR:AT1G76710
    Locus tag
    AT1G76710
    See related
    Araport:AT1G76710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASH1 RELATED PROTEIN 1; ASH1-RELATED PROTEIN 1; F28O16.8; F28O16_8; SDG26; SET domain group 26
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ASHH1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (28789698..28792719, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene calmodulin binding protein Neighboring gene miscRNA Neighboring gene eukaryotic translation initiation factor 2 (eIF-2) family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Interplay of the histone methyltransferases SDG8 and SDG26 in the regulation of transcription and plant flowering and development. Liu B, et al. Biochim Biophys Acta, 2016 Apr. PMID 26854085
    2. SET DOMAIN GROUP25 encodes a histone methyltransferase and is involved in FLOWERING LOCUS C activation and repression of flowering. Berr A, et al. Plant Physiol, 2009 Nov. PMID 19726574, Free PMC Article
    3. The Arabidopsis thaliana SET-domain-containing protein ASHH1/SDG26 interacts with itself and with distinct histone lysine methyltransferases. Valencia-Morales Mdel P, et al. J Plant Res, 2012 Sep. PMID 22438063
    4. Participation of chromatin-remodeling proteins in the repair of ultraviolet-B-damaged DNA. Campi M, et al. Plant Physiol, 2012 Feb. PMID 22170978, Free PMC Article
    5. Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana. Xu L, et al. Mol Cell Biol, 2008 Feb. PMID 18070919, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_001334740.1
    NM_001334741.1
    NM_106321.4
    NM_202429.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone H3K4 trimethyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables histone methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to UV-B IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within vegetative to reproductive phase transition of meristem IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SET domain group 26
    NP_177797.2
    • SET domain group 26 (SDG26); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, histone methylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (TAIR:AT1G77300.2); Has 5533 Blast hits to 5441 proteins in 455 species: Archae - 0; Bacteria - 385; Metazoa - 2333; Fungi - 552; Plants - 1033; Viruses - 4; Other Eukaryotes - 1226 (source: NCBI BLink).
    NP_974158.1
    • ASH1-RELATED PROTEIN 1 (ASHH1); FUNCTIONS IN: histone-lysine N-methyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, histone methylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (TAIR:AT1G77300.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28789698..28792719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106321.4 → NP_177797.2  SET domain group 26 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SV35, Q84WW6, Q945S9, Q9SRE2
      UniProtKB/TrEMBL
      A0A178W5S3, A0A5S9WUY2, A0A7G2E5G4
      Conserved Domains (2) summary
      smart00570
      Location:37 → 88
      AWS; associated with SET domains
      cd10531
      Location:90 → 225
      SET_SETD2-like; SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins

    2. NM_001334740.1 → NP_001321484.1  SET domain group 26 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR04, A0A7G2E5G4
      Conserved Domains (2) summary
      smart00570
      Location:37 → 88
      AWS; associated with SET domains
      cd10531
      Location:90 → 225
      SET_SETD2-like; SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins

    3. NM_001334741.1 → NP_001321485.1  SET domain group 26 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AR14, A0A7G2E5G4

    4. NM_202429.2 → NP_974158.1  SET domain group 26 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0SV35, Q84WW6, Q945S9, Q9SRE2
      UniProtKB/TrEMBL
      A0A178W5S3, A0A5S9WUY2, A0A7G2E5G4
      Conserved Domains (2) summary
      smart00570
      Location:37 → 88
      AWS; associated with SET domains
      cd10531
      Location:90 → 225
      SET_SETD2-like; SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2), nuclear SETD2 (NSD2), ASH1-like protein (ASH1L) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84WW6.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.