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    LINC01527 long intergenic non-protein coding RNA 1527 [ Homo sapiens (human) ]

    Gene ID: 101927988, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01527provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1527provided by HGNC
    Primary source
    HGNC:HGNC:51266
    See related
    Ensembl:ENSG00000224308 AllianceGenome:HGNC:51266
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    lnc-SPRR2D-1
    Expression
    Restricted expression toward skin (RPKM 3.0) See more
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    Genomic context

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    See LINC01527 in Genome Data Viewer
    Location:
    1q21.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (152929881..152949210, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (152066561..152085851, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (152902357..152921686, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1733 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1734 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1735 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1736 Neighboring gene sperm mitochondria associated cysteine rich protein Neighboring gene IVL promoter region Neighboring gene involucrin Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1335 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1336 Neighboring gene small proline rich protein 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1738 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1739 Neighboring gene small proline rich protein 4 Neighboring gene small proline rich protein 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A potential biomarker for colorectal cancer: long non-coding RNA RP1-13P20.6. Liu J, et al. Neoplasma, 2016. PMID 27596299
    2. Long non-coding RNA deregulation in tongue squamous cell carcinoma. Gao W, et al. Biomed Res Int, 2014. PMID 25045670, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183723.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL356867
      Related
      ENST00000419578.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      152929881..152949210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      152066561..152085851 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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