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    SNX29P2 sorting nexin 29 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 440352, updated on 10-Dec-2024

    Summary

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    Official Symbol
    SNX29P2provided by HGNC
    Official Full Name
    sorting nexin 29 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:31914
    See related
    Ensembl:ENSG00000103472 AllianceGenome:HGNC:31914
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RUNDC2C
    Expression
    Biased expression in lymph node (RPKM 18.9), ovary (RPKM 5.9) and 8 other tissues See more
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    Genomic context

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    See SNX29P2 in Genome Data Viewer
    Location:
    16p11.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (29302287..29365059)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (29584341..29647103)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (29313608..29376380)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903676 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:29276626-29276788 Neighboring gene uncharacterized LOC105371159 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:29296048-29296841 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:29296842-29297634 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29297988-29298594 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29298595-29299200 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29324515-29325223 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29330917-29331417 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29339867-29340728 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29340729-29341590 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10656 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29393253-29393874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:29393875-29394494 Neighboring gene nuclear pore complex interacting protein family member B11 Neighboring gene small nucleolar RNA U13 Neighboring gene SMG1 pseudogene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • RUN domain containing 2C

    Clone Names

    • MGC52410

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002939.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC025279, BC024293, BX648280
      Related
      ENST00000769490.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      29302287..29365059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      29584341..29647103
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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