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    LINC00923 long intergenic non-protein coding RNA 923 [ Homo sapiens (human) ]

    Gene ID: 91948, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC00923provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 923provided by HGNC
    Primary source
    HGNC:HGNC:28088
    See related
    Ensembl:ENSG00000251209 AllianceGenome:HGNC:28088
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC02254
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00923 in Genome Data Viewer
    Location:
    15q26.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (97742616..97874429, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (95508284..95640078, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (98285846..98417659, complement)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2254 Neighboring gene RNA, 5S ribosomal pseudogene 401 Neighboring gene uncharacterized LOC101927310 Neighboring gene uncharacterized LOC105371007 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:98172111-98172323 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:98234570-98235769 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:98236083-98236582 Neighboring gene MPRA-validated peak2442 silencer Neighboring gene uncharacterized LOC124903585 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr15:98513642-98514841 Neighboring gene arrestin domain containing 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • long intergenic non-protein coding RNA 2254

    Clone Names

    • MGC125556, MGC125557, MGC125558, MGC125559

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024172.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC027708, AK025311, BC105717

    2. NR_024173.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) is missing an internal exon compared to transcript variant 1, resulting in a shorter transcript.
      Source sequence(s)
      AC027708, BC105717
      Related
      ENST00000503874.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      97742616..97874429 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      95508284..95640078 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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