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    5430402O13Rik RIKEN cDNA 5430402O13 gene [ Mus musculus (house mouse) ]

    Gene ID: 73183, updated on 22-Oct-2024

    Summary

    Official Symbol
    5430402O13Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 5430402O13 geneprovided by MGI
    Primary source
    MGI:MGI:1918631
    See related
    Ensembl:ENSMUSG00000085776 AllianceGenome:MGI:1918631
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    3110047M22Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 2.0), genital fat pad adult (RPKM 1.0) and 26 other tissues See more
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    Genomic context

    See 5430402O13Rik in Genome Data Viewer
    Location:
    6 B2.3; 6 24.32 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (50543623..50571845)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (50566643..50594865)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38806 Neighboring gene STARR-positive B cell enhancer mm9_chr6:50510920-50511221 Neighboring gene cytochrome c, somatic Neighboring gene microRNA 6371 Neighboring gene sperm microtubule inner protein 4 Neighboring gene STARR-positive B cell enhancer ABC_E3655 Neighboring gene predicted gene, 38807 Neighboring gene STARR-seq mESC enhancer starr_15852 Neighboring gene Crn, crooked neck-like 1 pseudogene

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015581.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC153386, AK017262, AK139045
      Related
      ENSMUST00000126537.5
    2. NR_027892.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon compared to variant 1.
      Source sequence(s)
      AK139045
      Related
      ENSMUST00000147260.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      50543623..50571845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)