U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ccdc166 coiled-coil domain containing 166 [ Mus musculus (house mouse) ]

    Gene ID: 223648, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ccdc166provided by MGI
    Official Full Name
    coiled-coil domain containing 166provided by MGI
    Primary source
    MGI:MGI:1925902
    See related
    Ensembl:ENSMUSG00000098176 AllianceGenome:MGI:1925902
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2410075B13Rik
    Summary
    Is expressed in cerebral cortex ventricular layer and cortical plate. Orthologous to human CCDC166 (coiled-coil domain containing 166). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in colon adult (RPKM 5.3), whole brain E14.5 (RPKM 4.7) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ccdc166 in Genome Data Viewer
    Location:
    15 D3; 15 35.18 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (75851721..75854134, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (75979872..75982285, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2, subunit 3, pseudogene 1 Neighboring gene zinc finger protein 707 Neighboring gene mitogen-activated protein kinase 15 Neighboring gene family with sequence similarity 83, member H Neighboring gene IQ motif and ankyrin repeat containing 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Markers

    Clone Names

    • MGC37569

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    coiled-coil domain-containing protein 166

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163518.1NP_001156990.1  coiled-coil domain-containing protein 166 isoform 2

      See identical proteins and their annotated locations for NP_001156990.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) retains an intron resulting in a frameshift, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AC116487
      Consensus CDS
      CCDS59620.1
      UniProtKB/TrEMBL
      Q0P5Z5
      Related
      ENSMUSP00000138510.2, ENSMUST00000182172.2
      Conserved Domains (1) summary
      pfam13863
      Location:30143
      DUF4200; Domain of unknown function (DUF4200)
    2. NM_146059.2NP_666171.2  coiled-coil domain-containing protein 166 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (1).
      Source sequence(s)
      AC116487
      Consensus CDS
      CCDS59621.1
      UniProtKB/TrEMBL
      S4R181
      Related
      ENSMUSP00000138115.2, ENSMUST00000183130.3
      Conserved Domains (1) summary
      pfam14988
      Location:67260
      DUF4515; Domain of unknown function (DUF4515)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      75851721..75854134 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)