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    Cfap299 cilia and flagella associated protein 299 [ Mus musculus (house mouse) ]

    Gene ID: 75784, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cfap299provided by MGI
    Official Full Name
    cilia and flagella associated protein 299provided by MGI
    Primary source
    MGI:MGI:1916571
    See related
    Ensembl:ENSMUSG00000057816 AllianceGenome:MGI:1916571
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700007G11Rik; 4930428O21Rik
    Summary
    Located in cytoplasm. Is expressed in central nervous system; node; and reproductive system. Orthologous to human CFAP299 (cilia and flagella associated protein 299). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 12.5) See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Cfap299 in Genome Data Viewer
    Location:
    5 E3; 5 47.77 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (98476998..98949912)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (98329138..98802053)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A730035I17 gene Neighboring gene PR domain containing 8 Neighboring gene fibroblast growth factor 5 Neighboring gene STARR-seq mESC enhancer starr_13701 Neighboring gene predicted gene, 34475 Neighboring gene microRNA 703 Neighboring gene STARR-seq mESC enhancer starr_13702 Neighboring gene RIKEN cDNA 1700010H22 gene Neighboring gene STARR-seq mESC enhancer starr_13703 Neighboring gene predicted gene, 24279 Neighboring gene predicted gene, 42122 Neighboring gene Bmp3 5' regulatory region Neighboring gene predicted gene, 34563 Neighboring gene predicted gene, 42123 Neighboring gene bone morphogenetic protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Chemically induced (ENU) (1) 
    • Targeted (2) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    cilia- and flagella-associated protein 299
    Names
    uncharacterized protein C4orf22 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024614.2NP_001019785.1  cilia- and flagella-associated protein 299 isoform 1

      See identical proteins and their annotated locations for NP_001019785.1

      Status: VALIDATED

      Source sequence(s)
      AC132255, AC140359, AC147376, AC151721
      Consensus CDS
      CCDS19456.1
      UniProtKB/Swiss-Prot
      Q810M1
      Related
      ENSMUSP00000079208.4, ENSMUST00000080333.8
      Conserved Domains (1) summary
      pfam14713
      Location:13232
      DUF4464; Domain of unknown function (DUF4464)
    2. NM_001417875.1NP_001404804.1  cilia- and flagella-associated protein 299 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC132255, AC140359, AC147376, AC151721
    3. NM_001417876.1NP_001404805.1  cilia- and flagella-associated protein 299 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC147376
    4. NM_001417877.1NP_001404806.1  cilia- and flagella-associated protein 299 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC147376
    5. NM_001417878.1NP_001404807.1  cilia- and flagella-associated protein 299 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC132255, AC140359, AC151721
    6. NM_001417879.1NP_001404808.1  cilia- and flagella-associated protein 299 isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC147376

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      98476998..98949912
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006535280.5XP_006535343.1  cilia- and flagella-associated protein 299 isoform X2

      Conserved Domains (1) summary
      pfam14713
      Location:13206
      DUF4464; Domain of unknown function (DUF4464)
    2. XM_006535279.5XP_006535342.1  cilia- and flagella-associated protein 299 isoform X1

      Conserved Domains (1) summary
      pfam14713
      Location:13280
      DUF4464; Domain of unknown function (DUF4464)