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    A730049H05Rik RIKEN cDNA A730049H05 gene [ Mus musculus (house mouse) ]

    Gene ID: 74516, updated on 17-Aug-2024

    Summary

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    Official Symbol
    A730049H05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A730049H05 geneprovided by MGI
    Primary source
    MGI:MGI:1921766
    See related
    Ensembl:ENSMUSG00000048636 AllianceGenome:MGI:1921766
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    8430417A20Rik
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See A730049H05Rik in Genome Data Viewer
    Location:
    6 D1; 6 41.54 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (92793424..92820449)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (92816443..92843468)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene prickle planar cell polarity protein 2 Neighboring gene STARR-seq mESC enhancer starr_16669 Neighboring gene RNA binding motif protein 17 pseudogene Neighboring gene STARR-seq mESC enhancer starr_16670 Neighboring gene STARR-seq mESC enhancer starr_16671 Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 9 Neighboring gene predicted gene, 52913 Neighboring gene STARR-seq mESC enhancer starr_16672 Neighboring gene STARR-seq mESC enhancer starr_16673 Neighboring gene predicted gene 15737 Neighboring gene RIKEN cDNA 9530026P05 gene Neighboring gene STARR-seq mESC enhancer starr_16674

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_169152.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC110378
      Related
      ENSMUST00000057977.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      92793424..92820449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175209.2: Suppressed sequence

      Description
      NM_175209.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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