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    Scgb2b23-ps secretoglobin, family 2B, member 23, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 353109, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Scgb2b23-psprovided by MGI
    Official Full Name
    secretoglobin, family 2B, member 23, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:2655747
    See related
    Ensembl:ENSMUSG00000121416 AllianceGenome:MGI:2655747
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C2y; Scgb2b1; Abpbg23-ps; Scgb2b1-ps; 1700028O08Rik
    Expression
    Restricted expression toward testis adult (RPKM 8.2) See more
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    Genomic context

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    See Scgb2b23-ps in Genome Data Viewer
    Location:
    7 B1; 7 19.36 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (33324570..33352706, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (33625145..33653281, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 12770 Neighboring gene STARR-seq mESC enhancer starr_18567 Neighboring gene STARR-seq mESC enhancer starr_18568 Neighboring gene secretoglobin, family 1B, member 22, pseudogene Neighboring gene STARR-seq mESC enhancer starr_18569 Neighboring gene predicted gene 12763 Neighboring gene ribosomal protein L23A, pseudogene 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Did androgen-binding protein paralogs undergo neo- and/or Subfunctionalization as the Abp gene region expanded in the mouse genome? Karn RC, et al. PLoS One, 2014. PMID 25531410, Free PMC Article
    2. Selection shaped the evolution of mouse androgen-binding protein (ABP) function and promoted the duplication of Abp genes. Karn RC, et al. Biochem Soc Trans, 2014 Aug. PMID 25109968
    3. Positive selection shaped the convergent evolution of independently expanded kallikrein subfamilies expressed in mouse and rat saliva proteomes. Karn RC, et al. PLoS One, 2011. PMID 21695125, Free PMC Article
    4. Secretoglobins SCGB3A1 and SCGB3A2 define secretory cell subsets in mouse and human airways. Reynolds SD, et al. Am J Respir Crit Care Med, 2002 Dec 1. PMID 12406855
    5. The roles of gene duplication, gene conversion and positive selection in rodent Esp and Mup pheromone gene families with comparison to the Abp family. Karn RC, et al. PLoS One, 2012. PMID 23094077, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • allergen dI chain C2Y
    • secretoglobin, family 2B, member 1, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045685.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK006470
      Related
      ENSMUST00000339565.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      33324570..33352706 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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