U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam171a2 family with sequence similarity 171, member A2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100361389, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Fam171a2provided by RGD
    Official Full Name
    family with sequence similarity 171, member A2provided by RGD
    Primary source
    RGD:1307966
    See related
    EnsemblRapid:ENSRNOG00000021041 AllianceGenome:RGD:1307966
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307966
    Summary
    Predicted to be located in membrane. Orthologous to human FAM171A2 (family with sequence similarity 171 member A2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 63.2), Lung (RPKM 40.8) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Fam171a2 in Genome Data Viewer
    Location:
    10q32.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (87894049..87904213, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (87393888..87404051, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (90383111..90393476, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 39 Neighboring gene granulin precursor Neighboring gene integrin subunit alpha 2b Neighboring gene uncharacterized LOC134480882 Neighboring gene G patch domain containing 8

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    family with sequence similarity 171, member A2; protein FAM171A2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001430318.1 → NP_001417247.1  family with sequence similarity 171, member A2 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A6HJL0, D3ZT47

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      87894049..87904213 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006247473.5 → XP_006247535.1  protein FAM171A2 isoform X2

      UniProtKB/TrEMBL
      A6HJL0
      Conserved Domains (1) summary
      pfam10577
      Location:41 → 813
      UPF0560; uncharacterized protein family UPF0560

    2. XM_002727821.7 → XP_002727867.2  protein FAM171A2 isoform X1

      Related
      ENSRNOP00000028563.6, ENSRNOT00000028563.8
      Conserved Domains (1) summary
      pfam10577
      Location:41 → 820
      UPF0560; uncharacterized protein family UPF0560

    3. XM_039087758.2 → XP_038943686.1  protein FAM171A2 isoform X3

      Conserved Domains (1) summary
      pfam10577
      Location:1 → 636
      UPF0560; Uncharacterized protein family UPF0560

    4. XM_039087759.2 → XP_038943687.1  protein FAM171A2 isoform X3

      Conserved Domains (1) summary
      pfam10577
      Location:1 → 636
      UPF0560; Uncharacterized protein family UPF0560
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools