U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    D5Ertd615e DNA segment, Chr 5, ERATO Doi 615, expressed [ Mus musculus (house mouse) ]

    Gene ID: 52401, updated on 17-Aug-2024

    Summary

    Official Symbol
    D5Ertd615eprovided by MGI
    Official Full Name
    DNA segment, Chr 5, ERATO Doi 615, expressedprovided by MGI
    Primary source
    MGI:MGI:1277236
    See related
    Ensembl:ENSMUSG00000029092 AllianceGenome:MGI:1277236
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930435H24Rik
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See D5Ertd615e in Genome Data Viewer
    Location:
    5 B3; 5 24.5 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (45166513..45581742, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (45009171..45424400, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36076 Neighboring gene RIKEN cDNA 4930431F12 gene Neighboring gene predicted gene, 46912 Neighboring gene STARR-seq mESC enhancer starr_12993 Neighboring gene STARR-seq mESC enhancer starr_12994 Neighboring gene STARR-seq mESC enhancer starr_12995 Neighboring gene STARR-seq mESC enhancer starr_12996 Neighboring gene STARR-positive B cell enhancer ABC_E669 Neighboring gene quinoid dihydropteridine reductase Neighboring gene clarin 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131933.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK043596
      Related
      ENSMUST00000197016.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      45166513..45581742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)