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    LOC646736 uncharacterized LOC646736 [ Homo sapiens (human) ]

    Gene ID: 646736, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC646736
    Gene description
    uncharacterized LOC646736
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward thyroid (RPKM 5.0) See more
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    Genomic context

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    See LOC646736 in Genome Data Viewer
    Location:
    2q36.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (226142794..226180062)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (226624760..226661766)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (227007510..227044778)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:226331677-226332177 Neighboring gene MPRA-validated peak4058 silencer Neighboring gene neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 Neighboring gene MPRA-validated peak4060 silencer Neighboring gene MPRA-validated peak4061 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12387 Neighboring gene uncharacterized LOC105373914 Neighboring gene uncharacterized LOC107985992 Neighboring gene Sharpr-MPRA regulatory region 10559 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:226980528-226981354 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:226989173-226989719 Neighboring gene Sharpr-MPRA regulatory region 2716 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17192 Neighboring gene uncharacterized LOC105373915 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:227342641-227343191 Neighboring gene NANOG hESC enhancer GRCh37_chr2:227348646-227349147 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:227513913-227514828 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:227514829-227515742 Neighboring gene MPRA-validated peak4063 silencer Neighboring gene microRNA 5702

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomewide association analysis of coronary artery disease. Samani NJ, et al. N Engl J Med, 2007 Aug 2. PMID 17634449, Free PMC Article
    2. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. Voight BF, et al. Nat Genet, 2010 Jul. PMID 20581827, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046102.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC017935

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      226142794..226180062
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      226624760..226661766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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