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    SNORA38B small nucleolar RNA, H/ACA box 38B [ Homo sapiens (human) ]

    Gene ID: 100124536, updated on 10-Dec-2024

    Summary

    Official Symbol
    SNORA38Bprovided by HGNC
    Official Full Name
    small nucleolar RNA, H/ACA box 38Bprovided by HGNC
    Primary source
    HGNC:HGNC:33617
    See related
    Ensembl:ENSG00000200394 AllianceGenome:HGNC:33617
    Gene type
    snoRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be involved in RNA processing. Predicted to be located in Cajal body and nucleolus. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See SNORA38B in Genome Data Viewer
    Location:
    17q24.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (67740670..67740801)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (68615920..68616051)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (65736786..65736917)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol transfer protein cytoplasmic 1 Neighboring gene uncharacterized LOC124904045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12627 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65595554-65595782 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr17:65598997-65599506 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65636212-65636398 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12628 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12629 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:65651209-65651710 Neighboring gene uncharacterized LOC101928045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12631 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 12630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:65715225-65715946 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:65717475-65717706 Neighboring gene MPRA-validated peak2955 silencer Neighboring gene Sharpr-MPRA regulatory region 6571 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:65747753-65748532 Neighboring gene Sharpr-MPRA regulatory region 8992 Neighboring gene nucleolar protein 11 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:65764054-65764654 Neighboring gene Sharpr-MPRA regulatory region 7199 Neighboring gene ribosomal protein L17 pseudogene 41 Neighboring gene ribosomal protein SA pseudogene 67

    Genomic regions, transcripts, and products

    General gene information

    Other Names

    • SNORA38B snoRNA
    • small nucleolar RNA, H/ACA box 38B (retrotransposed)

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Cajal body IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003706.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006534
      Related
      ENST00000363524.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      67740670..67740801
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      68615920..68616051
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)