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    HSP90B3P heat shock protein 90 beta family member 3, pseudogene [ Homo sapiens (human) ]

    Gene ID: 343477, updated on 17-Sep-2024

    Summary

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    Official Symbol
    HSP90B3Pprovided by HGNC
    Official Full Name
    heat shock protein 90 beta family member 3, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:12100
    See related
    Ensembl:ENSG00000203914 AllianceGenome:HGNC:12100
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TRAP2; GRP94C; TRA1P2
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    Genomic context

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    See HSP90B3P in Genome Data Viewer
    Location:
    1p22.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (91642518..91644341)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (91487105..91488928)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (92108075..92109898)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723436 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1305 Neighboring gene WD repeat domain 82 pseudogene 2 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:92047752-92048951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92076797-92077298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92077299-92077798 Neighboring gene ribosomal protein L39 pseudogene 13 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:92110412-92110978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92149313-92149816 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1306 Neighboring gene transforming growth factor beta receptor 3 Neighboring gene Sharpr-MPRA regulatory region 4673 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:92202312-92203511 Neighboring gene Sharpr-MPRA regulatory region 7299 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92218493-92218993 Neighboring gene uncharacterized LOC124904659 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:92251462-92251665 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1307 Neighboring gene Sharpr-MPRA regulatory region 12731 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1309 Neighboring gene RNA, 7SL, cytoplasmic 653, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. NAK is recruited to the TNFR1 complex in a TNFalpha-dependent manner and mediates the production of RANTES: identification of endogenous TNFR-interacting proteins by a proteomic approach. Kuai J, et al. J Biol Chem, 2004 Dec 17. PMID 15485837
    2. The HSP90 family of genes in the human genome: insights into their divergence and evolution. Chen B, et al. Genomics, 2005 Dec. PMID 16269234
    3. Genome-wide association identifies ATOH7 as a major gene determining human optic disc size. Macgregor S, et al. Hum Mol Genet, 2010 Jul 1. PMID 20395239, Free PMC Article
    4. ∆F508 CFTR interactome remodelling promotes rescue of cystic fibrosis. Pankow S, et al. Nature, 2015 Dec 24. PMID 26618866, Free PMC Article
    5. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. Shami Shah A, et al. Cell Rep, 2019 May 14. PMID 31091453, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association identifies ATOH7 as a major gene determining human optic disc size.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Other Names

    • heat shock protein 90kDa beta (Grp94), member 3, pseudogene
    • heat shock protein 90kDa beta family member 3, pseudogene
    • heat shock protein 94c
    • tumor rejection antigen (gp96) 1 pseudogene 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_032978.2 

      Range
      101..1924
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      91642518..91644341
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      91487105..91488928
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_003130.2: Suppressed sequence

      Description
      NR_003130.2: This RefSeq was permanently suppressed because there is insufficient evidence that this locus is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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