Itfg1 integrin alpha FG-GAP repeat containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Itfg1provided by RGD
Full Name: integrin alpha FG-GAP repeat containing 1provided by RGD
Primary source: RGD:619898
See related: EnsemblRapid:ENSRNOG00000015843 AllianceGenome:RGD:619898
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Cda08
Summary: Predicted to be located in extracellular region and membrane. Predicted to be active in plasma membrane. Orthologous to human ITFG1 (integrin alpha FG-GAP repeat containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Brain (RPKM 672.8), Kidney (RPKM 438.3) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 19p11

Exon count:: 18

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (37383982..37504523)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (21210697..21331285)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (22281906..22403548)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: T-cell immunomodulatory protein

Names: CDA08-like protein; hypothetical protein CDA08; integrin-alpha FG-GAP repeat-containing protein 1; linkin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_133557.2 → NP_598241.2 T-cell immunomodulatory protein precursor

See identical proteins and their annotated locations for NP_598241.2

Status: PROVISIONAL

Source sequence(s)

BC085706

UniProtKB/Swiss-Prot

Q8R4E1

UniProtKB/TrEMBL

A6KDC8, F7FNV8, Q5U355

Related

ENSRNOP00000021711.4, ENSRNOT00000021711.7

Conserved Domains (1) summary

pfam13517
Location:54 → 117

VCBS; Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella