Mrpl40 mitochondrial ribosomal protein L40 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Mrpl40provided by RGD
Official Full Name: mitochondrial ribosomal protein L40provided by RGD
Primary source: RGD:1565444
See related: EnsemblRapid:ENSRNOG00000049686 AllianceGenome:RGD:1565444
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Located in mitochondrial ribosome. Orthologous to human MRPL40 (mitochondrial ribosomal protein L40). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Heart (RPKM 167.3), Muscle (RPKM 120.2) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 11q23

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	11	NC_086029.1 (95637751..95643587)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	11	NC_051346.1 (82133398..82139234)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	11	NC_005110.4 (86276616..86282452)

Chromosome 11 - NC_086029.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

Mrpl40 (e-PCR), detects polymorphism
- UniSTS:265728

RH128570 (e-PCR)
- UniSTS:211878

AI715998 (e-PCR)
- UniSTS:245977

Hira (e-PCR), detects polymorphism
- UniSTS:143346

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
part_of mitochondrial large ribosomal subunit	ISO Inferred from Sequence Orthology more info
part_of mitochondrial large ribosomal subunit	ISS Inferred from Sequence or Structural Similarity more info
is_active_in mitochondrial ribosome	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrial ribosome	IDA Inferred from Direct Assay more info	PubMed
located_in mitochondrion	ISO Inferred from Sequence Orthology more info
located_in nucleolus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: large ribosomal subunit protein mL40

Names: 39S ribosomal protein L40, mitochondrial; L40mt; MRP-L40

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.