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    Gm13375 predicted gene 13375 [ Mus musculus (house mouse) ]

    Gene ID: 433408, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Gm13375provided by MGI
    Official Full Name
    predicted gene 13375provided by MGI
    Primary source
    MGI:MGI:3649913
    See related
    Ensembl:ENSMUSG00000075514 AllianceGenome:MGI:3649913
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in adrenal adult (RPKM 11.1), lung adult (RPKM 10.7) and 27 other tissues See more
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    Genomic context

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    See Gm13375 in Genome Data Viewer
    Location:
    2 A3; 2 14.68 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (20973685..20975159)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (20968874..20970348)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene enhancer trap locus 4 Neighboring gene STARR-seq mESC enhancer starr_03841 Neighboring gene predicted gene 17171 Neighboring gene STARR-seq mESC enhancer starr_03842 Neighboring gene predicted gene, 54104 Neighboring gene STARR-seq mESC enhancer starr_03843 Neighboring gene STARR-seq mESC enhancer starr_03846 Neighboring gene CRISPRi-validated Etl4 enhancer cluster Neighboring gene STARR-seq mESC enhancer starr_03863 Neighboring gene STARR-seq mESC enhancer starr_03867 Neighboring gene STARR-seq mESC enhancer starr_03870 Neighboring gene Rho GTPase activating protein 21 Neighboring gene STARR-positive B cell enhancer mm9_chr2:20885831-20886131 Neighboring gene STARR-positive B cell enhancer ABC_E5897 Neighboring gene STARR-seq mESC enhancer starr_03884 Neighboring gene STARR-seq mESC enhancer starr_03887 Neighboring gene VISTA enhancer mm1447 Neighboring gene STARR-seq mESC enhancer starr_03890 Neighboring gene phosphoribosyltransferase domain containing 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_03891 Neighboring gene enkurin, TRPC channel interacting protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033225.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK158585, AL773540, BF463530
      Related
      ENSMUST00000126967.4

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      20973685..20975159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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