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    Armh1 armadillo-like helical domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 381544, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Armh1provided by MGI
    Official Full Name
    armadillo-like helical domain containing 1provided by MGI
    Primary source
    MGI:MGI:2686507
    See related
    Ensembl:ENSMUSG00000060268 AllianceGenome:MGI:2686507
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1661; Gm1662; Ncrna00082; 1700012C08Rik
    Summary
    Orthologous to human ARMH1 (armadillo like helical domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in testis adult (RPKM 51.7) and adrenal adult (RPKM 1.8) See more
    Orthologs
    human all
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    Genomic context

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    See Armh1 in Genome Data Viewer
    Location:
    4 D1; 4 53.43 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (117070523..117109329, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (117213326..117251917, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1651 Neighboring gene predicted gene, 23143 Neighboring gene predicted gene, 23287 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:116923419-116923602 Neighboring gene STARR-positive B cell enhancer ABC_E7982 Neighboring gene transmembrane protein 53 Neighboring gene STARR-seq mESC enhancer starr_11163 Neighboring gene ring finger protein 220 Neighboring gene predicted gene 12843 Neighboring gene predicted gene, 40231

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Armadillo-like helical domain containing-4 is dynamically expressed in both the first and second heart fields. Conway SJ, et al. Gene Expr Patterns, 2019 Dec. PMID 31655130, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    armadillo-like helical domain containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145637.1 → NP_001139109.1  armadillo-like helical domain containing protein 1

      See identical proteins and their annotated locations for NP_001139109.1

      Status: VALIDATED

      Source sequence(s)
      AK132996, AL671866, BC171980
      Consensus CDS
      CCDS51280.1
      UniProtKB/TrEMBL
      E9Q963
      Related
      ENSMUSP00000128613.2, ENSMUST00000165128.9
      Conserved Domains (1) summary
      pfam17741
      Location:1 → 268
      DUF5578; Family of unknown function (DUF5578)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      117070523..117109329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503206.4 → XP_006503269.1  armadillo-like helical domain containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006503269.1

      UniProtKB/TrEMBL
      E9Q963
      Conserved Domains (1) summary
      pfam17741
      Location:1 → 268
      DUF5578; Family of unknown function (DUF5578)

    2. XM_006503207.5 → XP_006503270.1  armadillo-like helical domain containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006503270.1

      UniProtKB/TrEMBL
      E9Q963
      Conserved Domains (1) summary
      pfam17741
      Location:1 → 268
      DUF5578; Family of unknown function (DUF5578)

    3. XM_030253635.2 → XP_030109495.1  armadillo-like helical domain containing protein 1 isoform X2

      Conserved Domains (1) summary
      pfam17741
      Location:1 → 198
      DUF5578; Family of unknown function (DUF5578)

    RNA

    1. XR_867885.4 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001033774.2: Suppressed sequence

      Description
      NM_001033774.2: This RefSeq was removed because currently there is insufficient support for the transcript and protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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