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    Snrnp48 small nuclear ribonucleoprotein 48 (U11/U12) [ Mus musculus (house mouse) ]

    Gene ID: 67797, updated on 27-Nov-2024

    Summary

    Official Symbol
    Snrnp48provided by MGI
    Official Full Name
    small nuclear ribonucleoprotein 48 (U11/U12)provided by MGI
    Primary source
    MGI:MGI:1915047
    See related
    Ensembl:ENSMUSG00000021431 AllianceGenome:MGI:1915047
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C6orf151; 1110050F08Rik; 6530403A03Rik
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in RNA splicing and mRNA processing. Predicted to be part of U12-type spliceosomal complex. Predicted to be active in cytosol and nucleoplasm. Orthologous to human SNRNP48 (small nuclear ribonucleoprotein U11/U12 subunit 48). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 11.5), limb E14.5 (RPKM 8.0) and 28 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Snrnp48 in Genome Data Viewer
    Location:
    13 A3.3; 13 18.04 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (38388880..38411639)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (38204914..38227663)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene cancer antigen 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:38129215-38129324 Neighboring gene RIO kinase 1 Neighboring gene STARR-seq mESC enhancer starr_34240 Neighboring gene STARR-seq mESC enhancer starr_34241 Neighboring gene desmoplakin Neighboring gene STARR-positive B cell enhancer ABC_E3077 Neighboring gene predicted gene, 40921 Neighboring gene predicted gene, 47978

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of U12-type spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of U12-type spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    U11/U12 small nuclear ribonucleoprotein 48 kDa protein
    Names
    U11/U12 snRNP 48 kDa protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026382.2NP_080658.2  U11/U12 small nuclear ribonucleoprotein 48 kDa protein

      See identical proteins and their annotated locations for NP_080658.2

      Status: VALIDATED

      Source sequence(s)
      AK004216, AK012916, BY263553, BY430458
      Consensus CDS
      CCDS36635.1
      UniProtKB/Swiss-Prot
      Q8BIU0, Q8BJ30, Q8CFF6, Q8VDQ5, Q9CSG3, Q9CVM5, Q9D361
      Related
      ENSMUSP00000089230.6, ENSMUST00000091641.13
      Conserved Domains (1) summary
      pfam05253
      Location:5679
      zf-U11-48K; U11-48K-like CHHC zinc finger

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      38388880..38411639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011244332.3XP_011242634.1  U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X3

      Conserved Domains (1) summary
      pfam05253
      Location:5679
      zf-U11-48K; U11-48K-like CHHC zinc finger
    2. XM_006516735.1XP_006516798.1  U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2

    3. XM_017315577.1XP_017171066.1  U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X1